SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12138

Length: 905 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene12138 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SHS6_RICCO	-	-	2.8026e-45	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	protein	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha/beta hydrolase fold-3	IPR013094	-	0.0	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A871

Fln msg: your sequence is shorter than subject: 245 - 338

Fln protein: ADLRCFNVFLSLSLSPLVKQCRVLCVSVNYRLAPEHHLPAACEDAMESV*WLHRLARGGCEDPWLSRYGDFARCILVGESAGGNLVHEVAIRTAAMQRLHPLALCGGIMINPGFVREQRSRSEMETPPDIALLSAEAVDKFYSLALPKGSTRDHRIVNPMGPFAPNLQQLNLPPFLVTIAEHDLMRDTQFEYCEAMKIAGKSVEVLISKNVGHCFHLHENVASQQQQAHDLLDAIQTFITSCCQ*

Protein Length: 246

Fln nts: TGCAGATCTGAGATGTTTTAACGTATTTCTTTCTCTTTCTCTTTCTCCGCTTGTCAAGCAGTGCAGGGTGTTGTGCGTCTCGGTAAATTACAGGCTGGCTCCCGAACACCATCTTCCTGCAGCATGCGAGGACGCCATGGAATCTGTTTAATGGCTTCACCGTCTGGCGCGCGGGGGCTGTGAAGATCCGTGGCTGAGTCGCTATGGAGATTTCGCGCGCTGTATTTTGGTGGGAGAAAGTGCAGGAGGGAACCTAGTGCACGAGGTAGCCATTCGTACAGCAGCTATGCAACGATTACATCCACTGGCGCTCTGCGGCGGTATCATGATAAATCCGGGATTTGTGAGAGAGCAGAGGAGCAGATCAGAGATGGAGACTCCTCCAGACATAGCTCTGCTCAGCGCCGAAGCGGTGGACAAATTTTACAGTCTTGCTTTGCCAAAGGGCAGCACTAGAGACCATCGCATCGTCAATCCAATGGGACCGTTTGCTCCAAATCTGCAACAGCTGAATCTTCCTCCATTTCTGGTGACGATAGCAGAGCACGATCTGATGCGTGACACGCAGTTTGAGTATTGCGAGGCCATGAAGATTGCGGGGAAGAGCGTGGAGGTATTGATATCGAAGAATGTGGGACATTGTTTTCATCTACACGAGAATGTCGCCTCACAGCAACAGCAGGCGCACGATCTCTTGGACGCAATACAGACGTTCATTACAAGTTGTTGCCAGTAG___ACCCCCAGAATATGAAATGAAGCCATCTATAGCAATATATCAATAATGTTGGAGACCTTATTTGGTCTAGGTATAACTCTTATGTTTAAAACTTACTAAATATATCATCTACTTTGGCTGAGATGGATTAATGCTAAAGTTACCTAATACTAATTAGTTAACATTAAAC

Fln Alignment:

sp_v1.1_unigene12138___ADLRCFNVFLSLSLSPLVKQCRVLCVSVNYRLAPEHHLPAACEDAMESV*WLHRLARGGCEDPWLSRYGDFARCILVGESAGGNLVHEVAIRTAAMQRLHPLALCGGIMINPGFVREQRSRSEMETPPDIALLSAEAVDKFYSLALPKGSTRDHRIVNPMGXXXXXXXXXXXXXXLVTIAEHDLMRDTQFEYCEAMKIAGKSVEVLISKNVGHCFHLHENV----ASQQQQAHDLLDAIQTFITSCCQ*TPR
D5A871_______________ADWRCLNLFLSR----LVKQCRVMCVSVDYRLAPEHRLPAACEDGMESLDWLHRLARGDSEDPWLSAHGDFTRCILLGESAGGNLVHEVAIRAATMERLHPLRLRGGIMIHPGFVREQRSRSEMETPPDIAKLSTEAVDKLFSLALPEGSTKDHPIINPMGPFAPNLQHLNLPPFLVAMADHDLIRDTQFEYCEAMKIAGKSVEVVISNNVGHCFHVYDDLVATDANFSQQAHDLLDAIRTFITTCCQDTSK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
676		75	25		0.996473
681	50			50	1.0
689	14	85			0.993533
699		33	66		1.0
729		66		33	1.0
738		33	66		1.0
757	66	33			1.0
758	33		66		1.0
768	66	33			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
859	878	GAGAAA GAGAAA GAGAAA GA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain