SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12128

Length: 425 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene12128
GAAATCAGTCTAGATGCTCTTAGAAATTTGGAGAAACAGATATCATATATGAAGGAACAACTTGCAGAAAGCAGAATATTACGAACTACTGCAGAGGATCACATGAAACAATTTCAGCTGGCATGGTCGGAGTCAGAGAAAAATGTTCAAGATCTTTCTGCACAGCTTGTTGAAGTCCGGGAAAAAATGGAGAAGGAAATAAAGGAGCGTGATGAAAGATATACAGAGCTTGATGCAAAGTTTGGGCGTTTGCAAAAGAGAGCAAAGCAGAAGATACAAGAACTTCAAAAGGAGAAAGAAGATGTTGAGGCTCAGCTTTCGATTGCGAGTGAGAAAGCTTCACAAGCCATGGCACAGCAATCTGCAGTCCAAGAGGAACTGGAATGCACTCGACGTCAAACAGGTGAAGCGCTACGGTCCTTAGA

Ace file of the UniGene sp_v1.1_unigene12128 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP binding protein, putative	-	-	4.0e-14	33%
FL-Next	Isoform 2 of Protein GRIP OS=Arabidopsis thaliana GN=GRIP	-	-	0.0	42%
Blast2go	gtp binding	-	-	4.3846e-17	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi vesicle transport	GO:0048193	Biological Process	4.3846e-17	72%
Blast2go	protein binding	GO:0005515	Molecular Function	4.3846e-17	72%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	4.3846e-17	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8S2T0-2

Fln msg: Distance to subject end: 546 aas, your sequence is shorter than subject: 141 - 765

Fln protein: EISLDALRNLEKQISYMKEQLAESRILRTTAEDHMKQFQLAWSESEKNVQDLSAQLVEVREKMEKEIKERDERYTELDAKFGRLQKRAKQKIQELQKEKEDVEAQLSIASEKASQAMAQQSAVQEELECTRRQTGEALRSL

Protein Length: 142

Fln nts: GAAATCAGTCTAGATGCTCTTAGAAATTTGGAGAAACAGATATCATATATGAAGGAACAACTTGCAGAAAGCAGAATATTACGAACTACTGCAGAGGATCACATGAAACAATTTCAGCTGGCATGGTCGGAGTCAGAGAAAAATGTTCAAGATCTTTCTGCACAGCTTGTTGAAGTCCGGGAAAAAATGGAGAAGGAAATAAAGGAGCGTGATGAAAGATATACAGAGCTTGATGCAAAGTTTGGGCGTTTGCAAAAGAGAGCAAAGCAGAAGATACAAGAACTTCAAAAGGAGAAAGAAGATGTTGAGGCTCAGCTTTCGATTGCGAGTGAGAAAGCTTCACAAGCCATGGCACAGCAATCTGCAGTCCAAGAGGAACTGGAATGCACTCGACGTCAAACAGGTGAAGCGCTACGGTCCTTAGA

Fln Alignment:

sp_v1.1_unigene12128___LRNLEKQISYMKEQLAESRILRTTAEDHMKQFQLAWSESEKNVQDLSAQLVEVREKMEKEIKERDERYTELDAKFGRLQKRAXXXXXXXXXXXEDVEAQLSIXXXXXXXXXXXXXXXXXELECTRRQTGEALRSL
Q8S2T0-2_____________LKQLQEQVASLSREIDVEKQTRVAAEQALEHLREAYSEADAKSQEYSSKFSQVEQKLDQEIKERDEKYADLDAKFTRLHKRAKQRIQEIQKEKDDLDARFREVNETAERASSQHSSMQQELERTRQQANEALKAM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain