SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12127

Length: 1527 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene12127

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Membrane acyl-CoA binding protein n=1 Tax=Agave americana RepID=Q4L0H4_AGAAM	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	acyl- binding protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	70%
Blast2go	response to cold	GO:0009409	Biological Process	70%
Blast2go	response to lead ion	GO:0010288	Biological Process	70%
Blast2go	lipid transport	GO:0006869	Biological Process	70%
Blast2go	lead ion binding	GO:0032791	Molecular Function	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%
Blast2go	fatty-acyl-CoA binding	GO:0000062	Molecular Function	70%
Blast2go	phosphatidic acid binding	GO:0070300	Molecular Function	70%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%
Blast2go	glyoxysome	GO:0009514	Cellular Component	70%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYI9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 381 - 403

Fln protein: LHELFQLLIAEVLNLFVDFKMSCDVCHLDV*NL*L*TL*FFPKISVSFAYNYIIRI*VTTPTIPKFHTQELCNLVLLDIMPFSQITS*VFL*KVD*AFSHSSFRKPLYKHPYAYFPFLCCMNSLSVDCQPLESASAACERGRGW*EQTLQPVTLRDTALAT*LIG*QKS**RGMRAAMAE*WRGPFLACARHAWQRLGNMNPEEAMEQYIGVLNKIFPRWSESLLEKNRMKDPDSSQKSASSGGMTSVFSSFMHQEGSDDEAKLEMIHSYAREADTAGLLQALEQGVPVDLRDSQGRTPLHWAVDRGHMEVVEHLLSRGADVNAKDMEGQTTLHYATMCEREGIAKYLIKHGADPSSKDNDGVTPYNLCPKDWDWLSENA*

Protein Length: 382

Fln nts: TTACATGAATTGTTTCAACTTCTAATAGCTGAAGTCTTAAACCTTTTTGTAGATTTTAAAATGTCATGTGATGTCTGTCATCTAGATGTTTAGAATTTATAACTTTGAACTCTCTGATTTTTTCCTAAAATTTCTGTTTCTTTTGCATATAATTACATTATAAGAATTTAGGTAACCACACCCACCATTCCTAAATTCCACACACAAGAATTGTGTAACCTTGTTCTTTTGGATATTATGCCATTTTCGCAAATCACATCGTAAGTTTTTTTGTAGAAAGTTGATTGAGCATTCAGTCATTCATCTTTTAGGAAACCCCTATACAAACATCCATATGCATACTTTCCTTTCCTATGCTGCATGAATTCTTTATCAGTAGATTGTCAGCCTCTTGAATCTGCATCTGCTGCTTGTGAGCGTGGAAGGGGGTGGTAAGAACAAACACTACAACCAGTTacCTtAAGGgaCACcGCTCtTGCgactTAGCTTATTGGATGACAAAAGTCATAATGACGGGGAATGAGAGCTGCCATGGCTGAGTGATGGAGGGGACCATTTTTGgCGTGTGCAAGGCATGCTTGGCAACGATTGGGAAACATGAATCCAGAGGAGGCTATGGAGCAATACATTGGTGTCCTCAACAAGATATTTCCTCGTTGGAGTGAAAGCCTTCTAGAAAAGAACAGAATGAAGGATCCTGACAGTTCTCAGAAATCGGCAAGCTCAGGAGGAATGACATCTGTCTTTAGCTCATTTATGCATCAAGAGGGATCAGATGATGAAGCGAAGTTGGAGATGATCCATTCATATGCCAGGGAAGCGGACACTGCAGGTCTGCTTCAAGCATTAGAGCAAGGAGTACCAGTAGATTTAAGGGATAGTCAAGGCAGAACTCCATTACACTGGGCTGTAGATCGCGGCCACATGGAAGTTGTGGAGCATCTCCTTTCCAGGGGTGCAGATGTCAATGCAAAGGACATGGAAGGACAGACGACGCTTCATTATGCGACAATGTGTGAGAGGGAGGGCATTGCTAAGTATCTGATAAAACATGGTGCAGATCCATCTTCTAAGGACAATGATGGTGTCACGCCTTACAATCTCTGCCCCAAAGATTGGGACTGGTTGTCTGAAAATGCCTGA___TTGATCTGTAATATGATACTCTGTCTAATATATATTACACTATGCGTACATATGATATGTATAAAGTTAATGTGCTACTTGCACTTGCTACAATACTTCTCACTCTGATGGATATGATGTGGAGAATTACGGAAAGTACCAATTTGATTGATTTGCCACCAAACATTATGTTATAGCTTACCAATTGACGTAGGCTCTAACCTAATGCTGTCTGAAAATTGGTGTCAAAATAGATTGGGAATACTTGCAAAAACATGATGGTGTGCCTAGCAGTTTCAACTACTGGAAATGCAAAATTTGGTTTCTTTCTATGTAAGAAAGAGCAATATATATCTAAATGTCTATTTTACGATTAGGATAAGTGGGAAGGCAAACCATTTTAGC

Fln Alignment:

sp_v1.1_unigene12127___HAWQRLGNMNPEEAMEQYIGVLNKIFPRWSESLLEKNRMKDPDSSQKSASSGGMTSVFSSFMHQEGSDDEAKLEMIHSYAREADTAGLLQALEQGVPVDLRDSQGRTPLHWAVDRGHMEVVEHLLSRGADVNAKDMEGQTTLHYATMCEREGIAKYLIKHGADPSSKDNDGVTPYNLCPKDWDWLSENA
A9NYI9_______________HAWQRLGNMNPEAAMEQYIGLLNKIFPSWNESLLEKNRTKDPDSSQLSASSGGMTSVFSSFMHQEGSDDEAKLEMIHSYAREADTAGLLQAIEQGVPVDLRDSQGRTPLHWAVDRGHMEVVEHLLSKGADVNAKDMEGQTALHYATVCEREGIAKYLIKHGADPSSKDNDGVTPYNLCPKDWDWLSENA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1478	77		22		0.999999
1483	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain