SustainPineDB

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Assembly info
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SNPs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene12067

Length: 378 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene12067
ACCAGATAGACATTCGCTCAAATAAGAAAACAGAGGAACCCATTCTAATCCACAAAAAGGGTTCTAAAGTTGTGGGACTTCATTTCAATCCATTAAATCCAGATCTTCTGATCAGCTGTGGCAATGATCATTTTGCTCGCCTTTGGGATATTCGCCAATTAAAAGCGGGGGCCTTCCTGGGAAGAGTTGAAACACCCACGTGTTGTGAACTCTGCTTATTTTTCGCCAAAAACTGGCAGTAAAATCATGACTACCTGCCAAGATAATCGGATACGTGTATGGGATTCTATCTTTGGTGATTTGAGCTATCCAAGCCGTGAGATCGTCCATAGTCATGATTTTAATCGTCACTTGACCTGCTTTCGTGCCGAATGGGAT

Ace file of the UniGene sp_v1.1_unigene12067

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA damage-binding protein, putative; K10140 DNA damage-binding protein 2	-	-	77%
FL-Next	sp=Protein DAMAGED DNA-BINDING 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	dna damage-binding	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	85%
Blast2go	DNA repair	GO:0006281	Biological Process	85%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	85%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	85%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6NQ88

Fln msg: Overlapping hits, possible frame ERROR between 179 and 175, Distance to subject end: 140 aas, your sequence is shorter than subject: 126 - 557

Fln protein: QIDIRSNKKTEEPILIHKKGSKVVGLHFNPLNPDLLISCGNDHFARLWDIRQLKAGAxxxEELKHPRVVNSAYFSPKTGSKIMTTCQDNRIRVWDSIFGDLSYPSREIVHSHDFNRHLTCFRAEWD

Protein Length: 127

Fln nts: ACCAGATAGACATTCGCTCAAATAAGAAAACAGAGGAACCCATTCTAATCCACAAAAAGGGTTCTAAAGTTGTGGGACTTCATTTCAATCCATTAAATCCAGATCTTCTGATCAGCTGTGGCAATGATCATTTTGCTCGCCTTTGGGATATTCGCCAATTAAAAGCGGGGGCCxxxxxxxxxGAAGAGTTGAAACACCCACGTGTTGTGAACTCTGCTTATTTTTCGCCAAAAACTGGCAGTAAAATCATGACTACCTGCCAAGATAATCGGATACGTGTATGGGATTCTATCTTTGGTGATTTGAGCTATCCAAGCCGTGAGATCGTCCATAGTCATGATTTTAATCGTCACTTGACCTGCTTTCGTGCCGAATGGGAT

Fln Alignment:

sp_v1.1_unigene12067___IDIRSNKKTEEPILIHKKGSKVVGLHFNPLNPDLLISCGNDHFARLWDIRQLKAGAxxEELKHPRVVNSAYFSPKTGSKIMTTCQDNRIRVWDSIFGDLSYPSREIVHSHDFNRHLTCFRAEWD
Q6NQ88_______________IDHRTNNSTGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFARIWDMRKLQPKAxxHDLAHKRVVNSAYFSPSSGTKILTTCQDNRIRIWDSIFGNLDLPSREIVHSNDFNRHLTPFKAEWD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
68	80	20			0.995493
71		20		80	0.995493
75	20		80		0.995493
76		20	80		0.995493
81		80	20		0.995493
82	80		20		0.995493
83		20		80	0.995493
89	80	20			0.995493
92	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain