SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11981

Length: 924 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11981

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CYCT1;4; cyclin-dependent protein kinase	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	cyclin family protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cyclin-dependent kinase.	EC:2.7.11.22	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	86%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	86%
Blast2go	response to virus	GO:0009615	Biological Process	86%
Blast2go	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclin, N-terminal	IPR006671	-	86%
Blast2go	Cyclin-like	IPR013763	-	86%
Blast2go	Cyclin C/H/T/L	IPR015429	-	86%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
839		33		66	0.997452
855		33		66	0.997452
856	33			66	0.997452
857	33	66			0.997452
858	33			66	0.997452
859		66	33		0.997452
863		33	66		0.997452
864	33	66			0.997452
867		66		33	0.997452
868		66	33		0.997452
869	66			33	0.997452
870	66		33		0.997452
873	33	66			0.997452
876			66	33	0.997452
877		66		33	0.997452
881	66			33	0.997452
882			33	66	0.997452
883	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain