SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11960

Length: 1476 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11960

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	reticulon family protein [Arabidopsis thaliana] sp\|Q8GYH6.1\|RTNLP_ARATH RecName: Full=Reticulon-like protein B16; Short=AtRTNLB16 dbj\|BAC42275.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50641.1\| unknown protein [Arabidopsis thaliana]	-	-	8.00001e-41	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	reticulon family protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Reticulon	IPR003388	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADD4

Fln msg:

Fln protein: MADASDIPSAVESNVNTPIEKSSELLAPETVDSPADNVTPTRYRLFNRQKTIHEVLGGGMTADVMLWRRRVLSIGVLVVATAAWYLFERSGYTFLSLISSILLLLVAILFIWANAASLLQRPLPPLPELELSEEIVNEVAASMRVRINDVLAVAHDIALGKDIKLFAKAVIFLWLFSIFGGWFNFLTLVYIGLFVSLTIPALYNKYEDHVDRNAEIAHKQIVKQYRNLDANVLSKIPRGLSKDKKMQ*

Protein Length: 249

Fln nts: ATGGGGAACTTGATCCTTGTTTTTAACGATATCAAATTTTTATGGACACCCGAGGAACCCATCCATCCTGTCTATTTATAGGCGTCGTGACCTTGGCTGTCACTCAAACTTGATCCTTGTTTTTAACGATATCAAGGTGTTCGTTAGGACTACTAATTTCAATTTTCACTCACAATTTTGAGGCCCTCATGCTTCTGCTGTAGCTCTGCATTCACTGAGCATTTCCAAGGTTGTTTTCGGCTGGGTTTTGCATTTCTGTAACAATTTTTTTTGCTGAGATTTGGTGTCAAGAGCCCTGATCTAGCGTTGGCGTCAAGAGGTCTGATCTTCGCAGGGAGAGACCGTTCAGGGTTTTGCAAGTTTTCTTCAAAACCTATTTAATAAAA_-_ATGGCGGATGCGTCAGACATCCCTTCTGCTGTGGAATCGAATGTTAATACGCCGATTGAGAAGTCATCAGAGCTTCTTGCACCAGAGACCGTGGATTCTCCTGCGGACAATGTGACGCCTACTCGATATCGGCTCTTCAACCGCCAGAAAACCATTCATGAAGTCTTAGGCGGAGGAATGACTGCTGATGTGATGCTATGGAGGAGAAGAGTTTTAAGTATTGGCGTACTTGTCGTTGCTACTGCTGCGTGGTATTTGTTTGAGAGATCAGGATATACGTTCTTGTCACTTATTTCCTCTATTCTTCTACTTTTGGTAGCTATTTTGTTTATCTGGGCAAATGCTGCGTCTCTCCTCCAGAGGCCACTACCTCCTCTGCCTGAATTGGAATTATCAGAAGAAATAGTAAACGAGGTAGCTGCTTCCATGCGTGTGAGAATTAATGACGTTCTAGCAGTAGCACATGATATTGCCCTTGGCAAAGACATTAAGCTTTTTGCAAAGGCGGTCATCTTTTTGTGGCTATTTTCAATTTTTGGTGGGTGGTTCAACTTCCTTACACTTGTCTATATTGGTCTTTTTGTTAGCCTAACAATTCCTGCATTGTACAACAAGTATGAGGATCATGTTGATAGAAATGCAGAAATAGCACATAAGCAAATTGTAAAGCAATACAGGAACCTTGATGCAAATGTTTTAAGCAAGATTCCAAGGGGATTGTCCAAAGACAAAAAGATGCAGTAA___GCTCTGGCCCTCAATGCAGGAAAGATCTGGTTTTGTGACATAATGGCGGCCTGAACATATGAATGTATAAACTTTGCTTGGAAAGTTATCAATTATTGTGAAGTTTGTCCATGTAGCTTGTCTATTGTTAGAACTTGGGACTTATTTTCCAAGGTGCATTTTGTTCATAAGTGGAGAACCCTGAGAAAATTGTGGAATCTGGCTTCTTATTCATTATTGTCAATGATAACTAGGTCACTGATGGATTGAACAGTGAAACTGGCTAAAGAATTCTTCCAGCTTGATGGTTGGTGATGTTCTTAACTGATTTTGAATTTTCACTTTCTGTGTTAAAATGTGTGCTTTG

Fln Alignment:

sp_v1.1_unigene11960___MADASDIPSAVESNVNTPIEKSSELLAPETVDSPADNVTPTRYRLFNRQKTIHEVLGGGMTADVMLWRRRVLSIGVLVVATAAWYLFERSGYTFXXXXXXXXXXXXXXXFIWANAASLLQRXXXXXXXXXXXXXIVNEVAASMRVRINDVLAVAHDIALGKDIKLFAKAVIFLWLFSIFGGWFNFLTLVYIGLFVSLTIPALYNKYEDHVDRNAEIAHKQIVKQYRNLDANVLSKIPRGLSKDKKMQ
D5ADD4_______________MADAADNSSAVDSYVNTPIDKSPELLGSETLDSPADNVPPAPYRLFNRQKTIHEVFGGGMAADVMLWRRRGICIGVLVAATAAWYLFERSGYTFLSLISTILLLLVAILFIWANAASLLQRPLPPLPELELSEEIVNKVAASMRVRINDVLAVAHDIALGKDIKLFAKAVVFLWLFSIFGGWFNFLTLVYTGLLISLTIPALYNKYEDHVDRNAEIAHKQIVKQYRNLDANVLSKIPRGFSKDKKMQ

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
86	33	66			0.997452
87	33		66		0.997452
88	33			66	0.997452
90	66			33	0.997452
95			66	33	0.997452
97	33	66			0.997452
98	33			66	0.997452
99			66	33	0.997452
104	25	50		25	0.995533
105			25	75	0.996473
106		75	25		0.996473
107	50		25		0.995533
151		85	14		0.993533
152			14	85	0.993533
153	85	14			0.993533
154		85	14		0.993533
156	85		14		0.993533
158		14		85	0.993533
159		14		85	0.993533
161		85		14	0.993533
162	85		14		0.993533
163	85		14		0.993533
164		14		85	0.993533
166			14	85	0.993533
287		50		50	1.0
555	16			83	0.994512
558			83	16	0.994512
560	16		83		0.994512
561			83	16	0.994512
562	83	16			0.994512
563	16		83		0.994512
566	83		16		0.994512
567		16		83	0.994512
568			83	16	0.994512
569	83			16	0.994512
639		27	72		1.0
643		27		72	1.0
647			27	72	1.0
648		27		72	1.0
651	72			27	1.0
652		27	72		1.0
655	72	27			1.0
1172	33			66	0.997452
1450		25		75	1.0
1461	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain