SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11959

Length: 1608 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11959

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	sugar transporter, putative (EC:1.3.1.74)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	polyol monosaccharide transporter	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	71%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	71%
Blast2go	transporter activity	GO:0005215	Molecular Function	71%
Blast2go	membrane	GO:0016020	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Blast2go	Sugar/inositol transporter	IPR003663	-	71%
Blast2go	General substrate transporter	IPR005828	-	71%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	71%
Blast2go	Major facilitator superfamily domain	IPR020846	-	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLD6

Fln msg: Separated hits, possible frame ERROR between 520 and 532, your sequence is shorter than subject: 375 - 538

Fln protein: AGYQRRGRLLAGIGVGFALVIAPVYTAELAPASSRGALTSLPEIFINVGVLAMPESPRWLVMQNRIPEAMVVLSRTSDDQAEADARLAQIMDAAGVQGNDDAHQSGGREGTSLDISNFPDAQKSHGEGVWLELLRPTPLVRRLLIIALGIQFFQQASGIDATVYYSPVVFKExxxxxAKTGILAATVAVGFAKTGFILVATFLLDRVGRRPLLLTSALGMTVSLMALAMGFDFIENTSETNKGAVILAILAVCCNVAFFSIGLGPVCWVLGSEIFPLRLRAQAASLGVIVNRIVSGIVVMTFLSVSRAITVSATFSLFACLSVLCVAFIYIFVPETKGKTLEEIAAFFDEEEAKRLSQGAELELGDTTSLVQKN*

Protein Length: 376

Fln nts: AGCAGGGTATCAACGCAGAGGCAGGCTTCTAGCGGGGATTGGTGTTGGGTTTGCCCTAGTGATTGCCCCAGTCTACACTGCCGAGCTTGCTCCTGCATCCAGCCGAGGAGCACTCACATCACTCCCTGAAATTTTTATCAATGTAGGTGTCCTTGCCATGCCCGAGTCCCCTAGATGGCTTGTTATGCAGAACAGGATCCCAGAAGCCATGGTGGTACTTTCAAGGACCTCGGATGATCAAGCCGAGGCTGATGCAAGATTGGCTCAAATTATGGATGCAGCAGGAGTTCAGGGAAATGATGATGCCCATCAATCAGGTGGGCGTGAGGGAACTTCTTTAGACATATCCAATTTCCCTGATGCCCAAAAGAGTCATGGGGAAGGAGTCTGGCTTGAGCTCCTGAGGCCCACTCCCCTGGTCCGAAGACTGCTTATCATAGCCTTAGGGATTCAATTCTTCCAGCAAGCATCAGGCATTGATGCAACAGTCTATTACAGTCCAGTGGTTTTCAAAGAAGCxxxxxxxxxxxxAGCCAAGACAGGGATTCTTGCTGCCACCGTTGCAGTGGGATTTGCAAAGACTGGATTTATCCTGGTGGCCACATTTTTGCTAGATCGTGTTGGGCGGAGACCATTGTTGCTTACCAGTGCCCTTGGAATGACTGTATCTTTGATGGCATTGGCAATGGGATTTGACTTCATAGAAAACACATCTGAAACCAATAAGGGAGCTGTGATTCTGGCTATATTGGCCGTGTGCTGCAATGTTGCTTTCTTCTCCATCGGATTAGGGCCGGTATGCTGGGTGTTAGGGTCTGAGATTTTCCCATTGAGGCTCCGAGCACAGGCAGCCAGTTTGGGTGTAATAGTAAACAGGATTGTTAGTGGGATAGTGGTAATGACTTTCTTGAGTGTTTCTAGGGCAATTACTGTGTCAGCTACATTTTCCCTTTTTGCTTGTCTATCAGTCCTCTGTGTAGCCTTCATATATATCTTTGTGCCCGAGACAAAGGGCAAAACTCTGGAAGAGATTGCGGCATTTTTTGATGAGGAAGAGGCAAAGAGACTGTCACAAGGCGCCGAGTTGGAGCTTGGGGACACAACATCTCTTGTCCAGAAAAACTGACTTCTCATACAATTATTGCTTGGATGGAATTTAGTTGACTTCCTAAAACAAACATTGAAAAAATCATAATGGCCTTCGACACCAGAATATCTATTTTAGAAACACGGAGGATCAGAGATGGAGTTGAAACACCTGATGATTGTAATTCCAAAGCTATGTGTACCGTACATGTTCGATTAGGTTTTGCAGAAGGTCAGAACAGACAGACTAATGCATTTTTACCATATGTTTCCCCTCTGATTTGTGCTGTCATTTTTAAACTCGGTTCTGCAGTATCTCAAGCTTCTCTCCCATGATAGTCAATGCCTATTATACCTGCAATGTTCTACCGGTATAGTTTCTCAGTGCTATATGTCATGATCTGGCTTGTGTCGCTGTATGTGTTTCCTTTATGGACCTTCGGTATTGCATCTGTCCTTGATGTTTCTATTGTGGCTGCTTCATGAGCCACCCTTTTGTATCTTATGATGTTTTTATATTGTC

Fln Alignment:

sp_v1.1_unigene11959___GRLLAGIGVGFALVIAPVYTAELAPASSRGALTSLPEIFINVG-------------------------------------VLAMPESPRWLVMQNRIPEAMVVLSRTSDDQAEADARLAQIMDAAG-VQGNDDAHQSGGREGTSLDISNFPDAQKSHGEGVWXXXXXXXXXXXXXXIIALGIQFFQQASGIDATVYYSPVVFKEAxxxxAKTGILAATVAVGFAKTGFILVATFLLDRVGRRPLLLTSALGMTVSLMALAMGFDFIENTSETNKG---AVILAILAVCCNVAFFSIGLGPVCWVLGSEIFPLRLRAQAASLGVIVNRIVSGIVVMTFLSVSRAITVSATFSLFACLSVLCVAFIYIFVPETKGKTL
B8LLD6_______________GRSVAGIGVGYALLIAPVYTAEVAPAASRGCLTCFPEIFINVGILIGYIANYALAGLPGNVNWRVMLGVGAVPPLFLGIAVLMMPESPRWLVMRNRNDDAMKVLLRTSVNQAEASERLDQIMEGIRYAQVNASVKKS----------SNPNEISKSDGEGKWHELYRPSRAIRRMLIIALGIQFFQQAGGIDATVYYSPVTFKTAxxxxSQEGILGATMAVGFAKAGFVIVAAFLIDKVGRRPLLLTSAIGSTVSLVALASALAIIGKKSTVGMGSEAASYLAVIAACSNVAFFSVGMGPVNWVLGAEIFPLRLRAKAASLGVGVNRGMSGVVSMTFISISNAITVPGTFYLFAGVSALCSIFIYFCVPETKGKTL

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
469	75		25		0.996473
475		75		25	0.996473
515	33		66		0.997452
521			33	66	0.997452
533		66		33	0.997452
565	33		66		0.997452
570	33	33		33	0.997753
632		50		50	1.0
678	50			50	1.0
695	50		50		1.0
728			66	33	0.997452
775			14	85	0.993533
779	14	85			0.993533
781	85	14			0.993533
783		85		14	0.993533
786	83	16			0.994512
789	83	16			0.994512
790	16		83		0.994512
791		16	83		0.994512
792			83	16	0.994512
794	20	80			0.995493
851		40		60	1.0
883	57	42			1.0
888			57	42	1.0
891		42		57	1.0
892	57	42			1.0
893			57	42	1.0
897		42		57	1.0
898	57			42	1.0
899	57		42		1.0
901		42	57		1.0
941		83	16		0.994512
959	20	80			0.995493
972		66	33		1.0
973		88	11		0.923564
978		11		88	0.923564
979		11	88		0.923564
981	88			11	0.923564
983		44	11	44	1.0
990	88	11			0.923564
991	11			88	0.923564
1043		43		56	1.0
1052	87			12	0.999964
1076	56		43		1.0
1080		81	18		1.0
1081	25		75		1.0
1104	60		40		1.0
1119		22	77		1.0
1144		33		66	1.0
1147		88	11		0.999937
1162			64	29	1.0
1186	72		27		1.0
1188	63		27		1.0
1210		42		57	1.0
1264	84	15			0.999986
1265		15		84	0.999986
1273	80	20			1.0
1274			20	80	1.0
1277		80	20		1.0
1278	80			20	1.0
1279	80		20		1.0
1281		20	80		1.0
1284	78			21	1.0
1285			21	78	1.0
1293	57	42			1.0
1294		21	78		1.0
1295		21		78	1.0
1310		38	61		1.0
1393	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain