SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11949

Length: 1796 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11949

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GPI-anchor transamidase, putative	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	gpi-anchor transamidase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	87%
Blast2go	GPI-anchor transamidase activity	GO:0003923	Molecular Function	87%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	87%
Blast2go	endomembrane system	GO:0012505	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase C13, legumain	IPR001096	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLJ3

Fln msg:

Fln protein: MRFAQLFVLSWLIGAVYSQTNGDFSTFGPAGTMHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNSYPAQVFNNENHQINLYGDNVEVDYRGYEVTVENFLRVLTGRHDPAVPRSKRLLSDEGSHILLYMTGHGGDQFLKFQDSEEIQSHDLADAIEQMREKRRYKELLIMVDTCQAATLYSQLYSPGVLAIGSSLKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLDMYDNSSLSSLFQSYNPKLLMSNAYYRVDLYPRPLDKVPVTNFFGSVMETIHTDSAYGGFTGKNVEKPAVSSVHCDSVDENQIKISRASPSLVDLNDTLTIYLQAEHNMFIHLWHRLQHSLDEFGDTDMQIQYGLLGLLLLVATTSWVFH*

Protein Length: 404

Fln nts: CGTCGTGACCTTGGCTACAGAATAGAACGGTACTTTTTTTAACAAATCACCTATATCCAAATCATCAAAACATCAATCAGAGTTTACCATTACAGGATACTTCCACAGGATGTTGGTCGATTTCTCTATGCTCTTTTTTCAAAACCAGCAAGGCAATAAAAGCCACAACGACACCCAGAAACATTTGAAATGAAAGTTTGCCCGCACTCGTACTTCTAAATCATATATTTTAAGCAGCGAAAATTCACAGGCGTTGGAaATGGCGAGTTGAGGAAATAGGAAA_-_ATGAGGTTCGCCCAGTTATTTGTATTATCATGGCTAATTGGGGCGGTCTACAGCCAAACAAATGGAGATTTCTCAACGTTCGGTCCTGCGGGGACAATGCACACTAACAACTGGGCAGTTTTGGTCTGCACATCTCGCTTCTGGTTCAACTACCGGCACATGGCCAATACATTGTCGTTATATCGGACCGTAAAAAGGCTGGGAATACCCGATGAGAGGATAATACTCATGTTGGCAGATGATATGGCTTGCAATGCTAGAAATAGTTATCCTGCTCAAGTTTTTAACAACGAGAATCATCAAATTAATCTATATGGTGATAATGTTGAGGTAGATTACAGAGGCTATGAGGTGACTGTTGAGAATTTCTTGCGTGTTTTGACTGGGCGACATGATCCTGCGGTTCCTCGTTCAAAGCGCCTCTTAAGTGATGAAGGTAGTCACATTCTTCTTTACATGACAGGGCATGGAGGTGACCAGTTTCTCAAATTTCAGGATTCTGAAGAGATTCAGAGCCATGATCTAGCTGATGCAATTGAACAAATGCGAGAGAAACGCAGGTATAAGGAGCTGCTGATAATGGTGGATACTTGCCAAGCTGCAACACTGTATTCCCAGCTTTACTCTCCTGGGGTGTTGGCAATTGGGAGCAGTTTGAAGGGTGAAAATTCCTATTCTCATCACCTTGATTCTGATGTTGGTGTATCTGTAGTGGACCGGTTTACGTTTTACACCCTGGCTTTTTTTGAGAGATTGGACATGTATGACAACTCATCATTAAGCAGTCTCTTCCAGTCTTACAATCCAAAATTATTGATGTCAAATGCATATTATCGAGTTGATTTGTATCCTCGACCTTTAGACAAGGTACCTGTTACAAATTTCTTTGGATCAGTGATGGAAACAATTCATACCGACTCTGCATATGGTGGGTTTACCGGAAAAAATGTTGAAAAACCAGCTGTCTCATCAGTTCATTGTGATTCAGTTGATGAGAATCAGATTAAAATCTCCAGAGCATCACCTAGTCTGGTTGACCTTAATGACACACTCACAATATATTTGCAGGCTGAACACAATATGTTTATCCACTTGTGGCACCGTCTGCAACATTCTCTAGATGAGTTTGGAGACACTGATATGCAAATTCAGTATGGTCTTCTTGGACTACTATTACTTGTTGCAACAACCTCGTGGGTTTTCCACTGA___ACTTTCTAGGAATACTAATGACATTAATGCATATACAAAAGCATGCTTGTACATCAACATGCCATTAGGGATATAATCAATTTCTTTACCCTGTATCCGGCTTACTCAAATTTCAAATAAACTGTAAAAGCATTCATTATTTTTTCTCGTTTTCCAAGCTTAACAAGAGCCAACCTGTTTCTATTATTGGGTTGCATCTATTCTTTTAACACAGAACTTGGTGAAATTATTGAGACTTCATGAAAGATAAATTGGAGTTAATGCTAAATTTTGCAGGAGTGTTTTGATCACTCTTTTGTGCACC

Fln Alignment:

sp_v1.1_unigene11949___KMRFAQLFVLSWLIGAVYSQTNGDFSTFGPAGTMHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNSYPAQVFNNENHQINLYGDNVEVDYRGYEVTVENFLRVLTGRHDPAVPRSKRLLSDEGSHILLYMTGHGGDQFLKFQDSEEIQSHDLADAIEQMREKRRYKELLIMVDTCQAATLYSQLYSPGVLAIGSSLKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLDMYDNSSLSSLFQSYNPKLLMSNAYYRVDLYPRPLDKVPVTNFFGSVMETIHTDSAYGGFTGKNVEKPAVSSVHCDSVDENQIKISRASPSLVDLNDTLTIYLQAEHNMFIHLWHRLQHSLDEFGDTDMQIQYXXXXXXXXVATTSWVFH
B8LLJ3_______________KMRFAQLFVLSWLILAVYSETNGDFSTFGPAGTMHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNSYPAQVFNNENHQINLYGDNVEVDYRGYEVTVENFLRVLTGRHDPAVPRSKRLLSDEGSHILLYMTGHGGDQFLKFQDSEEIQSHDLADAIEQMREKRRYKELLIMVDTCQAATLYSQLYSPGVLAIGSSLKGENSYSHHLDSDVGVSVVDRFTFYTLVFFERLDMYDNSSLSSLFQSYNPKLLMSNAYYRVDLYPRPLDKVPVTNFFGSVMETIHTDSAYSGFTGKNVEKPAVTSVYSYSVDENQIKISRTSPGQVDFNDTLTIYIQAEHNMFIHLWHRLQYSLDELGDTDMQIQYGLLGLLLLVTTTSWVFH

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
304			12	87	0.992554
305			12	87	0.992554
323	12			87	0.992554
403	12			87	0.992554
442	85			14	0.993533
444	85		14		0.993533
445		14		85	0.993533
446	14		85		0.993533
448		85		14	0.993533
449		85	14		0.993533
451	87		12		0.992554
457			12	87	0.992554
459		12		87	0.992554
840		75		25	0.996473
842		75	25		0.996473
843	75		25		0.996473
981		16	83		0.994512
982			16	83	0.994512
984		16	83		0.994512
990		16		83	0.994512
995	83		16		0.994512
999		16	83		0.994512
1002		83		16	0.994512
1003		16	83		0.994512
1004	16		83		0.994512
1058	83		16		0.994512
1060		83	16		0.994512
1062		16		83	0.994512
1064	83			16	0.994512
1065	83		16		0.994512
1068	75	12		12	0.975346
1072	12			87	0.992554
1073		88	11		0.923564
1074	11		11	66	0.944822
1075		11		88	0.923564
1077	11	66	11	11	0.944822
1078	77			22	0.999999
1080		11	11	77	0.968132
1083			11	88	0.923564
1084	77		11	11	0.968132
1086	88			11	0.923564
1087	77	11	11		0.968132
1092	88	11			0.923564
1093	88			11	0.923564
1094	88	11			0.923564
1095	11			88	0.923564
1124		11		88	0.923564
1149	83		16		0.999991
1150	83			16	0.999991
1151		16	83		0.999991
1164	83	16			0.999991
1251	12			87	0.999964
1311	80		9	9	0.999537
1315	9			90	0.999872
1615		75	25		0.996473
1768	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain