SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11892

Length: 1283 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11892

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine protein kinase, putative (EC:2.7.11.1)	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	kinase family protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	59%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	59%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	59%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	59%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	59%
Blast2go	Protein kinase-like domain	IPR011009	-	59%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	59%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	59%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	59%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: STOP codon was not found. Distance to subject end: 23 aas,

Fln protein: MAGLRPVKVVGRGAMGTVFLAQGQDCEKPALAMKVMSKPIMEKKSDGLKRARTEREILSGLRHPFLPELMGYVETDKIVAWVMDYCPGGDLNALRHRQAEKMFSESTIRFYAAEIVLALEHLHSLGVVYRDLKPENVLIQSNGHIMLTDFDLSTRLPPQGSLSADNVDQEQENEPSQQRASLGCLIPKNCVIPQNAKSKKGRRPNTARVSPVVKPRKGTSPNAAASSSPTPSVCGQKLNSFVGTEEYVSPEMVKDAGHDFRVDWWALGILLYEMQYGKTPFKGATRKETFYKILVQNPEFMGPWTPLRDLILKLLEKEPEKRLASARNIKSHLFFRGLNWDAVPHIPRAPYVPPPVSHEDLSSLKTLDIEQYIHKEADPKEDDKDNRAPTSPKEGETNDFG

Protein Length: 402

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGAGAAAATCGGATGAGGATGTCCGTAATTCGGAGGATGTGGGGATAGAATCG_-_ATGGCGGGGCTGCGGCCCGTGAAAGTGGTTGGCAGGGGCGCCATGGGGACTGTGTTTTTGGCCCAGGGTCAAGACTGCGAGAAGCCTGCGCTGGCCATGAAGGTTATGAGCAAACCTATCATGGAGAAAAAGAGCGATGGATTGAAGAGAGCGCGCACGGAAAGAGAAATACTGTCCGGGCTTCGGCATCCCTTTTTGCCTGAATTGATGGGGTACGTGGAGACAGACAAGATTGTTGCCTGGGTTATGGATTATTGCCCCGGAGGGGATCTTAATGCGCTCAGGCATCGCCAGGCCGAGAAGATGTTTTCAGAATCCACCATTAGGTTTTATGCAGCAGAGATTGTGCTAGCCTTGGAACATCTGCACAGCCTGGGCGTGGTGTACAGAGACCTGAAGCCTGAGAACGTTTTAATTCAGTCCAATGGCCATATAATGCTCACGGATTTCGACCTCTCGACCAGGCTTCCGCCTCAGGGGTCGTTATCAGCTGACAATGTCGACCAAGAACAAGAAAACGAACCTTCCCAGCAACGCGCATCCCTCGGCTGCCTGATCCCGAAAAACTGCGTGATCCCGCAAAACGCGAAAAGCAAGAAGGGCAGGCGACCGAACACGGCCCGGGTTTCCCCCGTGGTCAAACCTAGGAAGGGCACCAGCCCTAATGCAGCTGCTTCTTCTTCTCCTACTCCTTCTGTTTGCGGCCAGAAGCTGAATTCCTTCGTGGGCACGGAAGAGTACGTTTCTCCCGAAATGGTGAAGGACGCAGGCCACGACTTCCGCGTCGATTGGTGGGCGCTCGGGATTCTGCTATATGAAATGCAGTATGGAAAAACGCCATTCAAGGGCGCCACAAGAAAGGAAACCTTCTATAAGATCCTTGTCCAGAACCCCGAATTCATGGGACCCTGGACGCCATTGCGCGACCTCATTCTCAAATTGCTGGAAAAGGAGCCGGAAAAGAGATTGGCGTCGGCCCGCAACATTAAATCGCATCTCTTCTTCAGAGGTCTAAATTGGGACGCTGTACCCCACATACCTCGAGCGCCCTACGTTCCCCCACCCGTCTCTCACGAGGATTTGAGTTCATTGAAAACGTTAGATATCGAACAATACATTCATAAAGAAGCAGACCCAAAGGAAGATGACAAGGATAATAGGGCTCCAACATCGCCCAAAGAAGGTGAGACCAATGATTTTGGT

Fln Alignment:

sp_v1.1_unigene11892___ESMAGLRPVKVVGRGAMGTVFLAQGQDCEKPALAMKVMSKPIMEKKSDGLKRARTEREILSGLRHPFLPELMGYVETDKIVAWVMDYCPGGDLNALRHRQAEKMFSESTIRFYAAEIVLALEHLHSLGVVYRDLKPENVLIQSNGHIMLTDFDLSTRL-PPQGSLSADNVDQEQENEPSQQRASLGCLIP-----KNCVIPQNAKSKKGRRPNTARVSPVVKPRKGXXXXXXXXXXXXXXVCGQKLNSFVGTEEYVSPEMVKDAGHDFRVDWWALGILLYEMQYGKTPFKGATRKETFYKILVQNP----EFMGPWTPLRDXXXXXXXXXXXXXXASARNIKSHLFFRGLNWDAVPHIPRAPYVPPPVSHE
A9NPF9_______________QSVDEFTPIRTLGHGDMGTVYLAKHMTSGKP-VAMKVMSKELMQKKRSH-KRAWMEKEILQKLDHPFLPKLFTKFESKNHSFLLMSYCSGGDLNTLRQRQKDRKFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLMINNSQESRAKDSYRDQNGSCKKKTKSFLAKLNPGHVGAKDCM--------------NASAMITTKQDDSAKETSFCHLDGRKESVYEQAHSFVGTEEYVAPEILWGKGHGIAVDWWAFGVLLYEMVYGKTPFKGCNRKETFYNILCKEPPQLSEHSSPLKDLLRRLLVKEPTLRLGFNSGAQEIKNHEFFEGVRWDELEYVSRPPFVPPPFSFE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
292	80		20		0.995493
384	25		75		0.996473
385	75			25	0.996473
386	75			25	0.996473
389	66	33			0.997452
390	33			66	0.997452
393			33	66	0.997452
394	33			66	0.997452
397		66	33		0.997452
399		33	66		0.997452
401	66		33		0.997452
402			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain