SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11890

Length: 420 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene11890
AATGGGCTGCTCGTGCACAGCGGTATGTCTGTTGGGCAGACTGCCGATGTCAATAGTTTGTCATCCTTAATCTGCATTCAGAAAGTCGCCCTTGACAAAACGGTGAGAAATGAGCAGGATGACGTTGAATGATCACCTTATTGATTTGCAATTTGTTTCACCACTCAAGCATCACTTATCGATGAGTAGAGTTCTTGCTGACTCGGAACATAGTCCACATAATTTGAAACTGAGGGAAGCTGTCTGCAGCCGCTCCGAGCTTCCGGACGTTTGTCAAGGCTATGGAGAGCTTATCGAGAAGCAGCTCATTGTTCCAGGGTTGTCTAGATCGAAACGCATCATATTGATGCACCAAGTCATGGTTTGGCACCTCTTGAGCGTTCTTTTTTTACAGAGAGATGCAAAATTATCTATGGCCAT

Ace file of the UniGene sp_v1.1_unigene11890 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleoporin, putative	-	-	7.0e-19	40%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	55%
Blast2go	protein	-	-	2.78339e-21	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	2.78339e-21	62%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	2.78339e-21	62%
Blast2go	mRNA export from nucleus	GO:0006406	Biological Process	2.78339e-21	62%
Blast2go	nuclear membrane	GO:0031965	Cellular Component	2.78339e-21	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GVI5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 524 aas, your sequence is shorter than subject: 44 - 1067

Fln protein: NGLLVHSGMSVGQTADVNSLSSLICIQKVALDKTVRNEQDDVE*

Protein Length: 45

Fln nts: AATGGGCTGCTCGTGCACAGCGGTATGTCTGTTGGGCAGACTGCCGATGTCAATAGTTTGTCATCCTTAATCTGCATTCAGAAAGTCGCCCTTGACAAAACGGTGAGAAATGAGCAGGATGACGTTGAATGATCACCTTATTGATTTGCAATTTGTTTCACCACTCAAGCATCACTTATCGATGAGTAGAGTTCTTGCTGACTCGGAACATAGTCCACATAATTTGAAACTGAGGGAAGCTGTCTGCAGCCGCTCCGAGCTTCCGGACGTTTGTCAAGGCTATGGAGAGCTTATCGAGAAGCAGCTCATTGTTCCAGGGTTGTCTAGATCGAAACGCATCATATTGATGCACCAAGTCATGGTTTGGCACCTCTTGAGCGTTCTTTTTTTACAGAGAGATGCAAAATTATCTATGGCCAT

Fln Alignment:

sp_v1.1_unigene11890___NGLLVHSGMSVGQTADVNSLSSLICIQKVALDKTVRNEQD
B9GVI5_______________NGVLVHSGAPVGGNNSQRFLSSIIHVEKVALDKVVRDENN

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
260	33		66		1.0
261		33		66	1.0
264	62		37		1.0
265	62	37			1.0
269	62		37		1.0
270			37	62	1.0
275	62	37			1.0
276	62		37		1.0
277	37			62	1.0
279	62		37		1.0
282	80		20		0.995493
290		80	20		0.995493
292			40	60	1.0
293		20		80	0.995493
294		80	20		0.995493
296	80	20			0.995493
297	20	60	20		0.99255
299		20		80	0.995493
302	20	20		60	0.99255
303		60	40		1.0
304	20	60	20		0.99255
305		20		80	0.995493
308	25			75	0.996473
312		25		75	0.996473
313			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain