SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11870

Length: 1846 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11870

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GrpE protein homolog n=1 Tax=Picea sitchensis RepID=A9NWL2_PICSI	-	-	76%
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	grpe like protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	76%
Blast2go	protein import into mitochondrial matrix	GO:0030150	Biological Process	76%
Blast2go	copper ion binding	GO:0005507	Molecular Function	76%
Blast2go	adenyl-nucleotide exchange factor activity	GO:0000774	Molecular Function	76%
Blast2go	chaperone binding	GO:0051087	Molecular Function	76%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	76%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Blast2go	GrpE nucleotide exchange factor	IPR000740	-	76%
Blast2go	GrpE nucleotide exchange factor, head	IPR009012	-	76%
Blast2go	GrpE nucleotide exchange factor, coiled-coil	IPR013805	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWL2

Fln msg:

Fln protein: MNTSRAITGFLRKAFVQSRGFTVPTSPLTPRTCHRVHDIIQSPHKWSVSEKMQLFPQPRSLCLTPTSSPFSSVASPGVSQKESNPVSSAEGTVANEGEEIVEPASKKQDPKKTYQIKESDSESEISSDEEKEISTEDLIRIVQEKEDLLKKKHNEIKVMQEKVLRSYAEAENVMDRARREAENTKKFAIQSFAKGLLDVADNLSRASSVVKESFSKIDPSKDSSGAAPLLKTLLEGVAMTEKQLSDVFNKHGVERFDPLNEQFDPHMHMAVFQVQDASKQPGSVAVVLKPGYMLHDRVIRPAEVGVVEAVESEAAGNSEPSA*

Protein Length: 324

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGTTAGGTTTTGAGCTTGGCTGTGTTAATTCTAATGTTCTGTAATCCCTGTACAGCGGAAGAGCAATTTAGGGTTCCACGGGTAGCAATTTAGGGTTCCACGGATAGCTGTAGCGAGGAATACCTCTTTGGGTTCTTACAATATTATCTCCTAGCTGACCCATAATTATGTATTTCATATTACGTCTATAGCTAGGGAGGGATTTATAAAGTTTAACCAATTTCAGTTGATCAGCCCACATTGGCAGAAGAAAAGGCAATATTAGAAGTACTACCACTTGTTTATCCAGTTGATACAGCAGAAGCAAGGGTAGAATTAGCTCAAATTAATTAATCAATTTGAATAAGAAGCTTTTTCACCTGCGTTACTGCCAAACATTTATCATCCAGTTGGAGTTCGAGCTGTGAATCTGGCAGAAGGCTTCGTATCCAGAAAACCAAGGCTTCTACTTCTTTTAAGAATATAACTCTGGCACC_-_ATGAACACTTCCAGAGCTATAACGGGTTTTTTGCGAAAGGCTTTTGTTCAATCTAGGGGTTTCACAGTACCCACCTCTCCTCTGACCCCGCGAACATGCCACAGAGTACACGATATCATTCAGTCGCCACACAAGTGGAGTGTGAGTGAAAAAATGCAATTATTTCCTCAACCCCGTTCTCTATGTTTAACTCCCACATCATCTCCTTTCTCGTCTGTTGCATCACCAGGAGTATCACAGAAAGAATCAAATCCAGTTTCATCTGCGGAGGGTACAGTGGCTAATGAAGGTGAGGAAATCGTTGAGCCTGCCAGTAAAAAACAGGATCCTAAGAAGACTTATCAAATAAAAGAGTCAGATTCAGAATCAGAAATCTCGTCAGATGAAGAGAAAGAAATTTCAACAGAGGATTTGATTCGAATTGTTCAGGAGAAAGAGGATTTATTGAAGAAAAAACACAATGAGATTAAGGTGATGCAGGAGAAGGTTCTTCGGAGTTATGCAGAAGCAGAGAATGTCATGGATAGGGCAAGGCGCGAGGCAGAAAATACAAAAAAGTTTGCAATACAGAGCTTTGCCAAGGGCCTCTTAGATGTTGCTGATAACTTGTCAAGAGCATCATCTGTTGTTAAAGAAAGCTTTAGCAAGATAGACCCTTCCAAAGATTCAAGTGGAGCAGCACCACTACTGAAAACACTTTTGGAAGGGGTGGCGATGACTGAAAAGCAGCTTTCAGATGTGTTTAACAAACACGGAGTTGAAAGGTTTGATCCACTAAATGAACAGTTTGATCCTCATATGCATATGGCAGTATTTCAAGTTCAAGATGCTAGTAAGCAGCCTGGTAGCGTCGCTGTGGTTTTGAAGCCTGGGTACATGCTTCATGACAGAGTAATCCGTCCTGCTGAGGTTGGTGTTGTGGAGGCCGTTGAAAGTGAAGCTGCGGGAAATTCTGAGCCTTCTGCCTGA___TTTGGAGTTGGTCATCCTTATCTTCTTAATTCTTGTAGGATATCTGAAACAGCATTCAATTCCTTGCACAGTTTCAGATATCACAGTTTCAGATATCCGAATTAGAATGTAGATTTAGATGGTAGTCTTTTTGCTTCTTTCTGTCTATGAGGTCGCATTGAAGTCTCCGTTTCATGAACACAATTGCACTTGCAGTAGAATGGTGAGGGCAATTTTTTCCAGAGAAATTTTGTCAGGCTTTTTATAGCATAAGTTTGAGTATGTAGGGCCTTTCCAGCTGGTGCAAATATAAAAGATATCTTGTCCAATTCCTTGTGTCTAGTGTAGTGTACTTGTTTCTGTTGTGCTTTATTGGATTCTTTTGCTTCTGCTTGA

Fln Alignment:

sp_v1.1_unigene11870___MNTSRAITGFLRKAFVQSRGFTVPTSPLTPRTCHRVHDIIQSPHKWSVSEKMQLFPQPRSLCLTPTSSPFSSVASPGVSQKESNPVSSAEGTVANEGEEIVEPASKKQDPKKTYQXXXXXXXXXXXXXXXXXXXTEDLIRIVQEKEDLLKKKHNEIKVMQEKVLRSYAEAENVMDRARREAENTKKFAIQSFAKGLLDVADNLSRASSVVKESFSKIDPSKDSSGAAPLLKTLLEGVAMTEKQLSDVFNKHGVERFDPLNEQFDPHMHMAVFQVQDASKQPGSVAVVLKPGYMLHDRVIRPXXXXXXXXXXXXXXXNSEPSA
A9NWL2_______________MNTSRAVTGFLRKCLLQSRSLTVPTAPLVSRRCQTVHDIIQSPHKWIASEKMQFFSQPRSICLTPKSSLFSSVASPEVSQKESNPVSSVESTVASKGEEIVEPVSQNQEPKKAAQRKESDSESEISSDEEKELSIEDLIRLVQEKELLLKEKHKEIKVMQEKVLRSYAEVENVMDRARREAESTKKFAIQSFAKSLLDVADNLSRASSVVKESFSKIDPSKDSSGAAPLLKTLLEGVAMTEKQLSDVLKKHGVERFDPLNEQFDPNMHMAVFQVQDASKQTGSVAVVLKPGYTLHDRVIRPAEVGVVEGVESEVAGNSEPSA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
437	75		25		0.996473
438	75		25		0.996473
439			25	75	0.996473
968		16		83	0.994512
999		83		16	0.994512
1015		66		33	1.0
1782	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain