SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11859

Length: 940 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11859

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DREB2; AP2/ERF domain-containing transcription factor	-	-	4.0e-17	59%
FL-Next	tr=DREB protein; Taxus cuspidata (Japanese yew).	-	-	0.0	64%
Blast2go	ap2 erf domain-containing transcription factor	-	-	6.31094e-17	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	6.31094e-17	84%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	6.31094e-17	84%
Blast2go	seed development	GO:0048316	Biological Process	6.31094e-17	84%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	6.31094e-17	84%
Blast2go	response to water deprivation	GO:0009414	Biological Process	6.31094e-17	84%
Blast2go	response to trehalose stimulus	GO:0010353	Biological Process	6.31094e-17	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	6.31094e-17	84%
Blast2go	starch catabolic process	GO:0005983	Biological Process	6.31094e-17	84%
Blast2go	triglyceride catabolic process	GO:0019433	Biological Process	6.31094e-17	84%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	6.31094e-17	84%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	6.31094e-17	84%
Blast2go	hexokinase-dependent signaling	GO:0009747	Biological Process	6.31094e-17	84%
Blast2go	promoter binding	GO:0010843	Molecular Function	6.31094e-17	84%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	6.31094e-17	84%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	6.31094e-17	84%
Blast2go	nucleus	GO:0005634	Cellular Component	6.31094e-17	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	6.31094e-17	84%
Blast2go	DNA-binding, integrase-type	IPR016177	-	6.31094e-17	84%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
443	10		90		0.90298
446		90		10	0.90298
448		87	12		0.992554
450			87	12	0.992554
453		12		87	0.992554
456	12	87			0.992554
482			20	80	0.995493
485			20	80	0.995493
488		80	20		0.995493
491		20	80		0.995493
492		80		20	0.995493
493		80		20	0.995493
494		80	20		0.995493
497		80		20	0.995493
499			80	20	0.995493
501	20	80			0.995493
504	80	20			0.995493
554		14		85	0.993533
557		85	14		0.993533
558			14	85	0.993533
560		85		14	0.993533
562			85	14	0.993533
564	14	85			0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
796	814	GTCCCA GTCCCA GTCCCA G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain