SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11850

Length: 1032 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11850

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNase H domain-containing protein n=2 Tax=Arabidopsis RepID=D7KNL9_ARALY	-	-	3.00004e-41	57%
FL-Next	sp=DCC family protein At1g52590, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	37%
Blast2go	rnase h domain-containing protein	-	-	5.59384e-41	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribonuclease H.	EC:3.1.26.4	-	5.59384e-41	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	5.59384e-41	79%
Blast2go	ribonuclease H activity	GO:0004523	Molecular Function	5.59384e-41	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	5.59384e-41	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Putative thiol-disulphide oxidoreductase DCC	IPR007263	-	5.59384e-41	79%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
203			22	77	0.999999
230	22		77		0.999999
297	88			11	0.923564
301	11	88			0.923564
302	88	11			0.923564
303	88	11			0.923564
306		88	11		0.923564
308	88	11			0.923564
309			88	11	0.923564
311		66		33	1.0
312	88	11			0.923564
314		11	88		0.923564
316		11	88		0.923564
317	11			88	0.923564
395	60		40		1.0
419		66		33	1.0
466		14		85	0.993533
529		63		36	1.0
727		63		36	1.0
769	23		76		1.0
856			88	11	0.923564
857			11	88	0.923564
858			11	88	0.923564
871	88		11		0.923564
918	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain