SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11835

Length: 790 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene11835 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Strictosidine synthase, putative n=1 Tax=Ricinus communis RepID=B9RJ21_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	strictosidine synthase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Strictosidine synthase.	EC:4.3.3.2	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Indole alkaloid biosynthesis	00901	73%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	alkaloid biosynthetic process	GO:0009821	Biological Process	73%
Blast2go	strictosidine synthase activity	GO:0016844	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	73%
Blast2go	Strictosidine synthase, conserved region	IPR018119	-	0.0	73%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
51	33		66		0.997452
77	33	66			0.997452
392			87	12	0.992554
397		85		14	0.993533
405	75			25	0.996473
406	25		50		0.995533
407	75		25		0.996473
408	50		25	25	0.995533
409	50	25		25	0.995533
410	75		25		0.996473
411	75	25			0.996473
412		25	75		0.996473
417		33		66	0.997452
420	66		33		0.997452
423	66	33			0.997452
425		33		66	0.997452
426			33	66	0.997452
428		33		66	0.997452
569	25		75		0.996473
583	75	25			0.996473
584	75	25			0.996473
585	75	25			0.996473
587	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain