SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11809

Length: 2755 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11809
CGTCGTGACCTTGGCTGTCACTCAAGCGTTTAGTTTTTATTTTTATCTGTGGCAATACATGGGGTGCTGCTGAATCATATAGCTGTTAAAGGAAAATGCAGGCTAGTGGAGGTCCTGCTCTAGCCCAAGCAAGATCGGCTGGATTCCATGTTGTGGATTAGAGCTTAAGTTTGTCTTCTGTGGTGAATGTGGGATTGCGTTGTTACAGCAGATCAGCAAGGCTGGAGGTTCAAGTTGGGTTTGTTTGCTTTATGCTTGGTGGGACCTCTAATACATTGAATGTTTAGGAGAAAATAACAGCGATGCTGAATCTGTTTATGAAGGGCTTGTTCTAGTAGCAGAATTAACTGGATTTCTCATATTTGAGTCATCAAAGCTTCAAGTTGCCTGTGGGAAACTTGGGCTTGGTGTGAGGACATATGCATTGAATATATGTAGAGGGTGCCAACATTGCTGATTCTATACTTCATGGGTATTTTCTAGTACCAGAATCAGCTGGATTCCTTATATTTGGGTATTGATTTTTCAGTGCTTGAAGTTACCTGTGGTGGGAGTAGATATGCACTGAATATGTGGAGAGAATATCAAATGCAGATTTTGTTTCTTATGGGCCTGTTCTAGTACTAGAAATCGGGCTTGAAGTTGTCTCTGCGGGAGTTGGGCTTTGTGGTTGGAAATCTACGTCGAATATATGGAGAGAACAGCAACAGTATTGATTCTGTTCATAGTGGTTATGAGTCCATGGGCAGGGTCGGTTCCCATAGCCATTGCTGCTCCTCCAGGCAGGCCCATTTCCTCTACATCCCGATCTCCTGCCAAATCTTATGCCAAGTATGCTGAAATGATCTTGAACCCAAAGGAGCTTAAAGGTTTTATTTCGGAATCTTTTGCCTCTCTACTCAAATGGGTATGGGCTCTGCCGGCCACTACCAAAACTGGTAGCAAGGCTGTGCTGGAGTTTGAGAGTGGATACACAGTGGAAACAGTTTTTGATGGGAGCAAGCATGGAATTGAACCTCACGCCATACAGGTCTCTCCAGATGGAGAATTGCTTATACTAGACTCTGCAAACAGCAATATTCTCACAGTGACTCCTCCATTATCTCGCTATAGCAGAGCAAAATTATTTGCAGGTTCTGCAGATGGTTATGCAGGATATGTTGACGGACGGCCTCGAGAAGCTCGTCTCAATCATCCTAAAGGATTCACAGTAGATGACAAAGGAAACGTGTATGTTGCAGATACAATGAATATGGCTATCAGGAAGATTGGCGAAGCAGGTGTAACCACCATTGCTGGAGGGAGGTCGACTAAATCAGGGCATATCGATGGTCCCAGTGAAGATGCCAAGTTCTCAAATGATTTTGATCTTGTATATGTTAGCAGTACATGTTCCTTGTTGGTTGTTGATCGGGGAAATCAGGCTATTCGTGAGATTCAACTTAACTATGATGACTGTGCATATCAGTATGGCAGCAATTTTTCTTTAGGAATTCTTTTAATTGGAGGTGCTGCCTTCTGTGGCTATGTCCTTGCTCTACTTCAACAAGGAGTTGCAACTGCAGTTTTTCCACGAAGGGGAATTCAGGAGAAATCAGGAAGGTCGAAAAACTTGCCTGGACCTGCCAAAGGATCAGAGAGACCCTCATTCATCCCCATTGATGGAGAAGAAGAAATCGTAGATGGTGGCTGGGTTTCCTTCGGGAAGTTCTTTGTAGACATTTTGAAGTCTATTGCGGAGATCATTGGAGGTCTTTTTTCCTACCTTACAGGTGGATTTAGAAGAAAATCTCCTTATAAGAAAGGAAATTTATGGCCACTTCGGGATAGCCTTATTCCAGAAGATGATGATGATATTGAACCCCAGCTAACACCAAGAAAAAAGAAAACAGTGACATTCAGAGAGCCAGAAATCGACACACCCATCTCTCCTCCTTCTTCATCTGGTTCACAAAATGGTGATTTTGGGCCCACAAGAGAATATATCAGTCCATTTATTTCTAATAGGTCTGTCAATCAAAATCATGGGTATTATCGGGATGAAGACAATCAAGACCATGTTCAGCCATTGAGACATCATTCATCTGCTCCTGAAACATATTTTGAAAAGGATTATGATACAACTAATGAAGTTGTCTTCGGAGCTGTACAAGAAACCGAAGGGGTTTATAAACCAGTCGAAATTAAGCCTGTCGACTATAGCGATCCGATGTATAATCATCACAACATCCGGCCCCGAATGGGAATGGGACAGTACTATGATTACTGATTGCATTGCATTGCATAAGGCCTCGTCATAAACAGGGTCCTTCAGCGCTCAAATTCGTTCCTTCGGACAGTGCAATGCAACCTTGGCCAGTAACAGGATTTGCTCAAGCCATTCACTTTTGAAATTCCAACCCTTTGAATGGCTGCAGCAGCAGTCACTTCAGGGTTTCGGGTAGTTCGGCGGTCTGATTTCCCCTCTATTTCCAGCTTTAACCAATGTTTGTGATTGCTATATGTATAAAGCACATTGGATTTGGGTTTGAATGGGGTGTTTTCGGGGTTGGGTCGATGTAAAGATTCAAAGAATCATGGAGAAAAAGGATGGATACTGTAACAAAGATATGTATGACTTAAACAAGCATCGTCTCTAAATCCTTACTCAGCGAGATCCTCTTAATGAATTTTGTACCACAAAAACGGTCTATATTTTCATATTGAGGCATATAAAAGTTCTCTCTTATATATTCTAAATCTAAGAAAAATTAGT

Ace file of the UniGene sp_v1.1_unigene11809

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NHL repeat-containing protein	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	nhl repeat-containing protein	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NHL repeat	IPR001258	-	0.0	62%
Blast2go	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQD4

Fln msg: your sequence is longer than subject: 526 - 264

Fln protein: MERTATVLILFIVVMSPWAGSVPIAIAAPPGRPISSTSRSPAKSYAKYAEMILNPKELKGFISESFASLLKWVWALPATTKTGSKAVLEFESGYTVETVFDGSKHGIEPHAIQVSPDGELLILDSANSNILTVTPPLSRYSRAKLFAGSADGYAGYVDGRPREARLNHPKGFTVDDKGNVYVADTMNMAIRKIGEAGVTTIAGGRSTKSGHIDGPSEDAKFSNDFDLVYVSSTCSLLVVDRGNQAIREIQLNYDDCAYQYGSNFSLGILLIGGAAFCGYVLALLQQGVATAVFPRRGIQEKSGRSKNLPGPAKGSERPSFIPIDGEEEIVDGGWVSFGKFFVDILKSIAEIIGGLFSYLTGGFRRKSPYKKGNLWPLRDSLIPEDDDDIEPQLTPRKKKTVTFREPEIDTPISPPSSSGSQNGDFGPTREYISPFISNRSVNQNHGYYRDEDNQDHVQPLRHHSSAPETYFEKDYDTTNEVVFGAVQETEGVYKPVEIKPVDYSDPMYNHHNIRPRMGMGQYYDY*

Protein Length: 527

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCGTTTAGTTTTTATTTTTATCTGTGGCAATACATGGGGTGCTGCTGAATCATATAGCTGTTAAAGGAAAATGCAGGCTAGTGGAGGTCCTGCTCTAGCCCAAGCAAGATCGGCTGGATTCCATGTTGTGGATTAGAGCTTAAGTTTGTCTTCTGTGGTGAATGTGGGATTGCGTTGTTACAGCAGATCAGCAAGGCTGGAGGTTCAAGTTGGGTTTGTTTGCTTTATGCTTGGTGGGACCTCTAATACATTGAATGTTTAGGAGAAAATAACAGCGATGCTGAATCTGTTTATGAAGGGCTTGTTCTAGTAGCAGAATTAACTGGATTTCTCATATTTGAGTCATCAAAGCTTCAAGTTGCCTGTGGGAAACTTGGGCTTGGTGTGAGGACATATGCATTGAATATATGTAGAGGGTGCCAACATTGCTGATTCTATACTTCATGGGTATTTTCTAGTACCAGAATCAGCTGGATTCCTTATATTTGGGTATTGATTTTTCAGTGCTTGAAGTTACCTGTGGTGGGAGTAGATATGCACTGAATATGTGGAGAGAATATCAAATGCAGATTTTGTTTCTTATGGGCCTGTTCTAGTACTAGAAATCGGGCTTGAAGTTGTCTCTGCGGGAGTTGGGCTTTGTGGTTGGAAATCTACGTCGAATAT_-_ATGGAGAGAACAGCAACAGTATTGATTCTGTTCATAGTGGTTATGAGTCCATGGGCAGGGTCGGTTCCCATAGCCATTGCTGCTCCTCCAGGCAGGCCCATTTCCTCTACATCCCGATCTCCTGCCAAATCTTATGCCAAGTATGCTGAAATGATCTTGAACCCAAAGGAGCTTAAAGGTTTTATTTCGGAATCTTTTGCCTCTCTACTCAAATGGGTATGGGCTCTGCCGGCCACTACCAAAACTGGTAGCAAGGCTGTGCTGGAGTTTGAGAGTGGATACACAGTGGAAACAGTTTTTGATGGGAGCAAGCATGGAATTGAACCTCACGCCATACAGGTCTCTCCAGATGGAGAATTGCTTATACTAGACTCTGCAAACAGCAATATTCTCACAGTGACTCCTCCATTATCTCGCTATAGCAGAGCAAAATTATTTGCAGGTTCTGCAGATGGTTATGCAGGATATGTTGACGGACGGCCTCGAGAAGCTCGTCTCAATCATCCTAAAGGATTCACAGTAGATGACAAAGGAAACGTGTATGTTGCAGATACAATGAATATGGCTATCAGGAAGATTGGCGAAGCAGGTGTAACCACCATTGCTGGAGGGAGGTCGACTAAATCAGGGCATATCGATGGTCCCAGTGAAGATGCCAAGTTCTCAAATGATTTTGATCTTGTATATGTTAGCAGTACATGTTCCTTGTTGGTTGTTGATCGGGGAAATCAGGCTATTCGTGAGATTCAACTTAACTATGATGACTGTGCATATCAGTATGGCAGCAATTTTTCTTTAGGAATTCTTTTAATTGGAGGTGCTGCCTTCTGTGGCTATGTCCTTGCTCTACTTCAACAAGGAGTTGCAACTGCAGTTTTTCCACGAAGGGGAATTCAGGAGAAATCAGGAAGGTCGAAAAACTTGCCTGGACCTGCCAAAGGATCAGAGAGACCCTCATTCATCCCCATTGATGGAGAAGAAGAAATCGTAGATGGTGGCTGGGTTTCCTTCGGGAAGTTCTTTGTAGACATTTTGAAGTCTATTGCGGAGATCATTGGAGGTCTTTTTTCCTACCTTACAGGTGGATTTAGAAGAAAATCTCCTTATAAGAAAGGAAATTTATGGCCACTTCGGGATAGCCTTATTCCAGAAGATGATGATGATATTGAACCCCAGCTAACACCAAGAAAAAAGAAAACAGTGACATTCAGAGAGCCAGAAATCGACACACCCATCTCTCCTCCTTCTTCATCTGGTTCACAAAATGGTGATTTTGGGCCCACAAGAGAATATATCAGTCCATTTATTTCTAATAGGTCTGTCAATCAAAATCATGGGTATTATCGGGATGAAGACAATCAAGACCATGTTCAGCCATTGAGACATCATTCATCTGCTCCTGAAACATATTTTGAAAAGGATTATGATACAACTAATGAAGTTGTCTTCGGAGCTGTACAAGAAACCGAAGGGGTTTATAAACCAGTCGAAATTAAGCCTGTCGACTATAGCGATCCGATGTATAATCATCACAACATCCGGCCCCGAATGGGAATGGGACAGTACTATGATTACTGA___TTGCATTGCATTGCATAAGGCCTCGTCATAAACAGGGTCCTTCAGCGCTCAAATTCGTTCCTTCGGACAGTGCAATGCAACCTTGGCCAGTAACAGGATTTGCTCAAGCCATTCACTTTTGAAATTCCAACCCTTTGAATGGCTGCAGCAGCAGTCACTTCAGGGTTTCGGGTAGTTCGGCGGTCTGATTTCCCCTCTATTTCCAGCTTTAACCAATGTTTGTGATTGCTATATGTATAAAGCACATTGGATTTGGGTTTGAATGGGGTGTTTTCGGGGTTGGGTCGATGTAAAGATTCAAAGAATCATGGAGAAAAAGGATGGATACTGTAACAAAGATATGTATGACTTAAACAAGCATCGTCTCTAAATCCTTACTCAGCGAGATCCTCTTAATGAATTTTGTACCACAAAAACGGTCTATATTTTCATATTGAGGCATATAAAAGTTCTCTCTTATATATTCTAAATCTAAGAAAAATTAGT

Fln Alignment:

sp_v1.1_unigene11809___ESGYTVETVFDGSKHGIEPHAIQVSPDGELLILDSANSNILTVTPPLSRYSRAKLFAGSADGYAGYVDGRPREARLNHPKGFTVDDKGNVYVADTMNMAIRKIGEAGVTTIAGGRSTKSGHIDGPSEDAKFSNDFDLVYVSSTCSLLVVDRGNQAIREIQLNYDDCAYQYGS-------------NFSLGILLI
B8LQD4_______________EEGYRVETVLYGNKMDVYPHSI-LPFNGDILLLDSVNSTLFRIGLPLSQDSTIKVFAGSRNTVPGFADGGFLDAQFNHPKSFTLDSKGNIYVADRANHAIRKISKSGVSTIAGGTAGKTGHADGPSQEAMFSNDYDLTFIPSICALLVSDRGNRMIRQIKLPPGDCVQHSGSGTHWVTPVIASGVSFLLGLLLM

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
712	85	14			0.993533
715			14	85	0.993533
716		14	85		0.993533
718		14		85	0.993533
721	14			85	0.993533
815	20			80	0.995493
1113	66	33			0.997452
1120		66		33	0.997452
1121	66		33		0.997452
1123	66	33			0.997452
1125			33	66	0.997452
1126			33	66	0.997452
1128		33		66	0.997452
1439			20	80	0.995493
1440		80	20		0.995493
1527		12		87	0.992554
1699		90		10	0.90298
1700		90		10	0.90298
1824		75		25	0.996473
1882	75	25			0.996473
2071			16	83	0.994512
2093		25		75	0.996473
2156	80			20	0.995493
2157	80		20		0.995493
2158		80	20		0.995493
2159		80	20		0.995493
2316		83		16	0.994512
2344	75		25		1.0
2345	75			25	1.0
2346		25		75	1.0
2348		75		25	1.0
2349	75		25		1.0
2356	12		87		0.992554
2358		75		25	1.0
2362	75	25			1.0
2365	87			12	0.992554
2366		12	87		0.992554
2367	12		87		0.992554
2368	75		25		1.0
2389		12		87	0.992554
2671	88			11	0.923564
2682	14	14			0.984337

SSRs (tot: 2)

Start position	End position	Sequence	Length
1844	1855	GAT GAT GAT GAT	12
2269	2285	ATTGC ATTGC ATTGC AT	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain