SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11798

Length: 1833 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11798

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lipase family protein	-	-	70%
FL-Next	sp=Triacylglycerol lipase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	24%
Blast2go	lipase family protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	0.0	81%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q67ZU1

Fln msg: your sequence is longer than subject: 449 - 418

Fln protein: QGLGYPYEAIRVITADGYVLLLERIPRRDSRKVVYLQHGLLDSSLGWVSNGVVGSQAFAAYDQGYDVFLGNFRGLVSREHIDNRISSQRYWRYSINEHGTQDIPAMIEKIHEIKISELRQLRSDTESSAETDSLPYSICAVSHSLGGAAMLMYLVTRCLKGLPHRLSRVTLLSPAGFHEDAAMFFKLFEYFFPIFAPVLAPLIPGLYIPTKFFRMLFHKLARDFQNYPAIGGLVQTLISYVVGGDSSNWVGVIGTPHYNMNDMPGVSYRVAVHLAQMKHEKKFLMYDFGSSSANMEAYGMPYPLDIAANYGVIDVPVDVVAGQKDRLIPRSMVLKHYRMLKEAGVKVSYEEFDYAHLDFTFSHKEEILTYVMSRLLLGSSPTTKSRKSGYGSQKYQGSRDKRKSSKRLSRKSFGKQDSISPVDKLPEEPTSPISGCSSSEGSSTSANA*

Protein Length: 450

Fln nts: TCAAGGATTGGGATATCCATATGAGGCTATTCGCGTCATTACTGCTGATGGTTATGTCCTCCTCCTGGAAAGAATACCGAGACGTGATTCAAGGAAGGTTGTTTACTTACAGCATGGATTGTTGGATTCTTCTTTGGGTTGGGTGTCAAATGGAGTAGTTGGCTCTCAAGCATTTGCAGCTTATGATCAAGGTTATGATGTTTTTCTGGGGAATTTTCGAGGTTTGGTTTCCAGAGAACACATAGACAATCGCATCTCTTCTCAACGGTACTGGAGGTATTCAATCAATGAACATGGAACACAAGACATCCCTGCAATGATTGAAAAAATCCATGAGATAAAGATATCTGAGCTAAGACAGTTGAGATCCGATACTGAATCTTCTGCTGAAACAGACAGTCTTCCTTATTCGATCTGTGCTGTTTCCCACAGTCTTGGTGGAGCTGCCATGTTGATGTATTTAGTGACTAGGTGCCTGAAAGGCCTTCCACATCGACTTTCAAGAGTGACTCTTTTATCACCTGCGGGATTTCATGAGGATGCTGCCATGTTCTTCAAATTATTTGAGTATTTTTTTCCTATTTTTGCTCCAGTTTTAGCTCCCTTGATACCTGGACTATATATACCTACCAAATTTTTTCGGATGCTTTTTCACAAATTAGCTCGGGATTTTCAGAATTATCCTGCAATAGGAGGACTTGTACAGACCTTGATCAGCTATGTTGTTGGAGGTGATAGCTCAAATTGGGTGGGTGTGATAGGTACACCACACTATAATATGAATGACATGCCAGGGGTCTCCTATCGGGTTGCGGTACACTTAGCACAGATGAAACATGAAAAGAAATTTCTTATGTATGATTTTGGGAGTTCATCTGCCAATATGGAAGCCTATGGTATGCCTTACCCATTAGACATTGCGGCAAACTATGGTGTCATTGATGTTCCAGTTGATGTAGTTGCTGGTCAAAAGGATAGACTCATACCTCGTTCCATGGTGTTGAAGCACTACCGGATGTTGAAGGAAGCTGGAGTCAAAGTATCATATGAAGAGTTTGATTATGCTCACCTTGACTTCACTTTTTCTCACAAGGAGGAGATTCTCACATATGTTATGTCAAGACTCCTGCTTGGGTCATCACCAACAACAAAATCAAGGAAGTCTGGTTATGGCAGTCAGAAATATCAAGGGAGTAGGGACAAGAGAAAGTCCAGCAAACGTCTATCTCGCAAATCATTTGGCAAGCAAGACAGCATTTCTCCAGTCGACAAATTGCCTGAAGAACCAACGAGTCCCATTTCAGGCTGCAGTTCTTCTGAAGGATCTTCAACGTCAGCCAATGCATAG___CTTAGTGGAAGCCCACATGGAAAAAAAACTGTTTTCAGTGATATTTGGAAAGGAAGATGCAGACAGATTAGTATTTAATTGCCAAGTTCATCGACATGGTGGGCTTCAGAAAATATATGAAAATTTATTATCAATTCTGCTTATAGGTATTTCCTGTTGAAACTATGACCCTGGTATGTTGCCTAATTTTTTCTATATTTAATTTAGTATCACTTTACTATGGCCATCAAAGCTTATATTTAAGCACAGGTTGGGGTGTGATATGATTTCATTTATGGGAATTGTTTTTAATTGTCATTTTTTTGGGCTTTTATTAAATTGCCCATGTCTGAGACTTCTTAACAAAGCATTTGCTAGAAGTGACAAGTGAAACTGGGAAACACTTTTTTTCTCTGCTATTACAGAGCTGAAACCAATTCATTTCTCCTTGTTTTTTGCATGTCAAATGATACACCTTTCATGTGGAAACATGAAATGTATATACA

Fln Alignment:

sp_v1.1_unigene11798___GYPYEAIRVITADGYVLLLERIPRRDS---------RKVVYLQHGLLDSSLGWVSNGVVGSQAFAAYDQGYDVFLGNFRGL-VSREHIDNRISSQRYWRYSINEHGTQDIPAMIEKIHEIKISELRQLRSDTESSAETDSLPYSICAVSHSLGGAAMLMYLVTRCLKGLPHRLSRVTLLSPAGF--HEDAAMFFKLFEYFFPIFAPVLA--PLIPGLYIPTKFFRMLFHKLARDFQNYPAIGGLVQTLISYVVGGDSSNWVGVIGTPHYNMNDMPGVSYRVAVHLAQMKHEKKFLMYDFGSSSANMEAYG-----------MPYPLDIAANYGVIDVPVDVVAGQKDRLIPRSMVLKHYRMLKEAGVKVSYEEFDYAHLDF
Q67ZU1_______________GYKCEEHDVVTQDGYILNMQRIPEGRAGAVAGDGGKRQPVLIQHGILVDGMSWLLNPADQNLPLILADQGFDVWMGNTRGTRFSRRHKYLNPSQRAFWNWTWDELVSYDLPAMFDHIHGLTGQKIHYL--------------------GHSLG---TLIGFASFSEKGLVDQVRSAAMLSPVAYLSHMTTVIGDIAAKTFLAEATSILGWPEFNPKSGLVGDFIKAICLKAGIDCYD----------LVSVITGKNCCLNASTIDL--FLANEPQSTSTKNMIHLAQTVRDKELRKYNYGSSDRNIKHYGQAIPPAYNISAIPHELPLFFSYGGLDSLADV----KD----VEFLLDQFKYHDIDKMNVQFVK-DYAHADF

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
398	88		11		0.923564
851	10	90			0.90298
853			10	90	0.90298
854	90		10		0.90298
855			10	90	0.90298
1358	25		75		1.0
1360		88		11	0.923564
1608		10		90	0.90298
1610	90	10			0.90298
1611	10			90	0.90298
1612	90		10		0.90298
1617			10	90	0.90298
1618	10			90	0.90298
1621			10	90	0.90298
1622			10	90	0.90298
1623		10		90	0.90298
1624	90	10			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain