SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11791

Length: 2213 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene11791
ATGGGGGAGGGCGAAGGAGGCTGGAAACTTAGTGGGTTCTGCAACATTTATGTCCAGTGGGAGGCATCATTGCCAGAGACATAAAAGAAAAGAGGTCGGGCCACGGTCATGCCTAGGGAAGTGAGAAAGAAAAGATCCCAGTTGCTGGTTTGAAGGGAAAACGTAAGGGAATTGAATTGAATTTTCTATTGAATTCTCTGGCACTGGGATTTGGCCTTTTTAATCCCAGGCATGGGCGCATGGTCATGCCCAAATTTAAAAGATATATAGGTGTATTTTAAGAGCTTCTATGCCTGTGCCCTTCTGTGAGCTTCTGACATGAAGAATACATTGGAGGAAGAGCTCTGGTAATGATGGAGGTGTGAAAATTGAGCATGGAGGCCTTGCAGTGCAAACCGTTAGGAATAGGATTAGGAATAGGAATAAGATCATTTGGAAGAGGACAAAACCGATGGATTACTGGCTTCGGTTCTCATCAATCGCCAGCCATGGAGTCGCTCCCACAGATGCCAAGATCGTCGGTGACATTCCATACCTTTGTCCCTTGTTCTTGGATGAGAATTTCTGTTCTCATCTGCCTTGTTTGCTTCCTCCTGCTTCTTCCTCTGCCTCCTGCTGCTGGTGCTCTGGAGGAGGAGCCATTGATGCCTAATTTCAATGTTACAGAGATTAAATTGAAGAGAATAGCAAAGCATCTCAAGAGATTGAACAAACCGGCCTTAAAGACTATTCAGAGTCCAGATGGAGATATTATTGATTGCGTGCTCGCTCATCAACAGCCTGCATTCGATCACCCTCGTTTGAAAGGACTCTTGCCTCAGGAACCGCCCGTGAGACGGCCGAAGGGCTATAAAACCGGATCCTCATTGAAGAATTTTCAGCCATGGCATCGACAGGGGAAGTGTCCTAAGGGGACTGTTCCCATTCGCCGTACGAAAAAAGAAGATGTCATGAGATTTGGCTCTGTGAAAAGATTTGGCCGTAAGCCCCATCGTCGGCCTACTCCCTGGAATCCTACGAAGCACTACACAGTCGATAGTGGCACCCATGAACATTCTGTAGGATTCGTGTCGGGGGACCAGTACTATGGTGCTAAAGCCAGTCTGAATGTATGGACGCCTCTTATACAGGAGCCTTCTGAGTTCAGTCTGTCACAGATGTGGGTCATCTCTGGTACCTTTGACAATGATCTTAACACAATTGAAGCTGGGTGGCAAGTCAGCCCGGAGCTCTATGGAGATTCATATCCCCGGTTTTTCACTTATTGGACGACTGATGCTTATCAGGCTACTGGTTGCTATAACCTGTTATGCTCAGGATTTGTGCAAACAAATAATGAGATCGCTATTGGAGCTGCCATATCACCAACTTCACAATATAATGGTGGCCAGTTTGATATCAGCTTGCTTGTTTGGAAGGATCCAAATCATGGGAACTGGTGGCTGGAATTTGGAGATGGACAATTAGTAGGATACTGGCCTGCGTTTCTCTTCAGCCATCTAGCAGATCATGCGACCATGGTTCAGTGGGGAGGGGAGATTGTGAACACGATGCCCGAGGGCATGCACACCAGCACACAGATGGGCAGTGGGCATTTTGCAGAAGAAGGATTCTCCAGAGCCAGTTATTTCAGGAATATTCAGGTGGTAGATTGGGACAACAGCTTGATACCTCTAGCCAATCTACAGCTTTTATCAAATCATCCAGAGTGCTATGACATTCAAGGAGGGCAAAGTAGCAAGTGGGGAAACTACTTCTACTATGGTGGGCCAGGCCGAAATCCAAGATGTCCATAAGGCTGCCTTCACACACAATTATTATACACAGATCTACACATATTTTTCTCTTTTTGATTTCAGGGATTCATGTCTAATGAATTCTAAGCTGGGTATGCATTCTTTTTCTCCACCACTGTGTGTCAGATTGACCATAGATCATCTCTGTGTTGTTTCCCGACGAGCAGTGATTCAGATATACTTGCTTTTGTCTTCTTACAGAGCTGCTGTTTTTTTGTCCAGTACATAATGTGGGTATGGTAGAACGACTGGAGTGATTATAATACACACTGTATGTTTCATTTTGTGGGCTTCAAGTCCCAAGCCCTTCCTGTAACGTTTATTCATGTCAAACGCCTAATAAGTCCAGTAAGGATATTATAAAAGAGAGAACATTATGCAGTGTGATTATCACAAATTACTCTGCAACTGTATTCG

Ace file of the UniGene sp_v1.1_unigene11791 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative carboxyl-terminal proteinase n=1 Tax=Gossypium hirsutum RepID=Q93X76_GOSHI	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	carboxyl-terminal proteinase	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF239	IPR004314	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A842

Fln msg: your sequence is longer than subject: 474 - 399

Fln protein: MEALQCKPLGIGLGIGIRSFGRGQNRWITGFGSHQSPAMESLPQMPRSSVTFHTFVPCSWMRISVLICLVCFLLLLPLPPAAGALEEEPLMPNFNVTEIKLKRIAKHLKRLNKPALKTIQSPDGDIIDCVLAHQQPAFDHPRLKGLLPQEPPVRRPKGYKTGSSLKNFQPWHRQGKCPKGTVPIRRTKKEDVMRFGSVKRFGRKPHRRPTPWNPTKHYTVDSGTHEHSVGFVSGDQYYGAKASLNVWTPLIQEPSEFSLSQMWVISGTFDNDLNTIEAGWQVSPELYGDSYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNEIAIGAAISPTSQYNGGQFDISLLVWKDPNHGNWWLEFGDGQLVGYWPAFLFSHLADHATMVQWGGEIVNTMPEGMHTSTQMGSGHFAEEGFSRASYFRNIQVVDWDNSLIPLANLQLLSNHPECYDIQGGQSSKWGNYFYYGGPGRNPRCP*

Protein Length: 475

Fln nts: ATGGGGGAGGGCGAAGGAGGCTGGAAACTTAGTGGGTTCTGCAACATTTATGTCCAGTGGGAGGCATCATTGCCAGAGACATAAAAGAAAAGAGGTCGGGCCACGGTCATGCCTAGGGAAGTGAGAAAGAAAAGATCCCAGTTGCTGGTTTGAAGGGAAAACGTAAGGGAATTGAATTGAATTTTCTATTGAATTCTCTGGCACTGGGATTTGGCCTTTTTAATCCCAGGCATGGGCGCATGGTCATGCCCAAATTTAAAAGATATATAGGTGTATTTTAAGAGCTTCTATGCCTGTGCCCTTCTGTGAGCTTCTGACATGAAGAATACATTGGAGGAAGAGCTCTGGTAATGATGGAGGTGTGAAAATTGAGC_-_ATGGAGGCCTTGCAGTGCAAACCGTTAGGAATAGGATTAGGAATAGGAATAAGATCATTTGGAAGAGGACAAAACCGATGGATTACTGGCTTCGGTTCTCATCAATCGCCAGCCATGGAGTCGCTCCCACAGATGCCAAGATCGTCGGTGACATTCCATACCTTTGTCCCTTGTTCTTGGATGAGAATTTCTGTTCTCATCTGCCTTGTTTGCTTCCTCCTGCTTCTTCCTCTGCCTCCTGCTGCTGGTGCTCTGGAGGAGGAGCCATTGATGCCTAATTTCAATGTTACAGAGATTAAATTGAAGAGAATAGCAAAGCATCTCAAGAGATTGAACAAACCGGCCTTAAAGACTATTCAGAGTCCAGATGGAGATATTATTGATTGCGTGCTCGCTCATCAACAGCCTGCATTCGATCACCCTCGTTTGAAAGGACTCTTGCCTCAGGAACCGCCCGTGAGACGGCCGAAGGGCTATAAAACCGGATCCTCATTGAAGAATTTTCAGCCATGGCATCGACAGGGGAAGTGTCCTAAGGGGACTGTTCCCATTCGCCGTACGAAAAAAGAAGATGTCATGAGATTTGGCTCTGTGAAAAGATTTGGCCGTAAGCCCCATCGTCGGCCTACTCCCTGGAATCCTACGAAGCACTACACAGTCGATAGTGGCACCCATGAACATTCTGTAGGATTCGTGTCGGGGGACCAGTACTATGGTGCTAAAGCCAGTCTGAATGTATGGACGCCTCTTATACAGGAGCCTTCTGAGTTCAGTCTGTCACAGATGTGGGTCATCTCTGGTACCTTTGACAATGATCTTAACACAATTGAAGCTGGGTGGCAAGTCAGCCCGGAGCTCTATGGAGATTCATATCCCCGGTTTTTCACTTATTGGACGACTGATGCTTATCAGGCTACTGGTTGCTATAACCTGTTATGCTCAGGATTTGTGCAAACAAATAATGAGATCGCTATTGGAGCTGCCATATCACCAACTTCACAATATAATGGTGGCCAGTTTGATATCAGCTTGCTTGTTTGGAAGGATCCAAATCATGGGAACTGGTGGCTGGAATTTGGAGATGGACAATTAGTAGGATACTGGCCTGCGTTTCTCTTCAGCCATCTAGCAGATCATGCGACCATGGTTCAGTGGGGAGGGGAGATTGTGAACACGATGCCCGAGGGCATGCACACCAGCACACAGATGGGCAGTGGGCATTTTGCAGAAGAAGGATTCTCCAGAGCCAGTTATTTCAGGAATATTCAGGTGGTAGATTGGGACAACAGCTTGATACCTCTAGCCAATCTACAGCTTTTATCAAATCATCCAGAGTGCTATGACATTCAAGGAGGGCAAAGTAGCAAGTGGGGAAACTACTTCTACTATGGTGGGCCAGGCCGAAATCCAAGATGTCCATAA___GGCTGCCTTCACACACAATTATTATACACAGATCTACACATATTTTTCTCTTTTTGATTTCAGGGATTCATGTCTAATGAATTCTAAGCTGGGTATGCATTCTTTTTCTCCACCACTGTGTGTCAGATTGACCATAGATCATCTCTGTGTTGTTTCCCGACGAGCAGTGATTCAGATATACTTGCTTTTGTCTTCTTACAGAGCTGCTGTTTTTTTGTCCAGTACATAATGTGGGTATGGTAGAACGACTGGAGTGATTATAATACACACTGTATGTTTCATTTTGTGGGCTTCAAGTCCCAAGCCCTTCCTGTAACGTTTATTCATGTCAAACGCCTAATAAGTCCAGTAAGGATATTATAAAAGAGAGAACATTATGCAGTGTGATTATCACAAATTACTCTGCAACTGTATTCG

Fln Alignment:

sp_v1.1_unigene11791___TEIKLKRIAKHLKRLNKPALKTIQSPDGDIIDCVLAHQQPAFDHPRLKGL----LPQEPPVRRPKGY-KTGSSLKNFQPWHRQGKCPKGTVPIRRTKKEDVMRFGSVKRFGRKPHRRPTPWNPTKHYTVDSGTHEHSVGFVSGDQYYGAKASLNVWTPLIQEPSEFSLSQMWVISGTFD-NDLNTIEAGWQVSPELYGDSYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNEIAIGAAISPTSQYNGGQFDISLLVWKDPNHGNWWLEFGDGQLVGYWPAFLFSHLADHATMVQWGGEIVNTMPEGMHTSTQMGSGHFAEEGFSRASYFRNIQVVDWDNSLIPLANLQLLSNHPECYDIQGGQSSKWGNYFYY
D5A842_______________TSGKLCRIHEHLRRINKPAVKSIQSSDGDIIDCIHRHKQPAFNHPLLKKHKIQDLPERPSKFRPAPVNRTSFSVHAAQTWHLAGFCPEGTIPVRRTFAEDLMRADSPKRYGRKSHRAA---RFDQKPDVNGFGHEHAIAYVQGEEYYGAKATINVWAPRIETLNEFSLSQLWVLSGSFDGSDLNSIEAGWQVSPELYGDTRPRLFTYWTSDSYQETGCYNLLCSGFVQTNNKIAIGASISPVSEFADTQYDITILIWKDPKEGNWWMEFADRTLVGYWPSELFTHLADHANMIEWGGEIVNTEAGGEHTSTQMGSGHFAEEGFGKASYFRNLEIVDSDNSLRGVSSMLTLAEHTYCYNIQNRYNIEWSNHFYF

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
381	12			87	0.992554
384	87	12			0.992554
385		12		87	0.992554
386	12	87			0.992554
387	12			87	0.992554
391	12			87	0.992554
392	87		12		0.992554
393		12		87	0.992554
394	75		25		1.0
396		25		75	1.0
397	87		12		0.992554
398	85		14		0.993533
399		14		85	0.993533
400		14		85	0.993533
401	14		85		0.993533
402	14			85	0.993533
407		14	85		0.993533
409	85	14			0.993533
411	14		85		0.993533
413	42		57		1.0
513	44		55		1.0
516		11		88	0.923564
587	88		11		0.923564
590	11			88	0.923564
592		11	88		0.923564
594	11			88	0.923564
595	11	88			0.923564
599	87			12	0.992554
600		12	87		0.992554
602	87	12			0.992554
603			12	87	0.992554
604	12	87			0.992554
606			14	85	0.993533
1407		16		83	0.994512
1752	83			16	0.994512
1800		20		80	0.995493
1801	80	20			0.995493
1918	75	25			0.996473
1919		25	75		0.996473
1920		25	75		0.996473
1975		33		66	1.0
2106	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2031	2045	AATTC AATTC AATTC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain