SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11789

Length: 2773 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11789
ATGGGGCAATTAGGTAAGAGCGAGTCCGAGTTTGGTGAAAGGCCTTCATTAAACCCCCGACGCCCACGCCCACCATGGGGGCTACACGGCCATGATTGCGGGGATTGAAAGCTTCGCCTTGGTCTCAACGACTCACTGCGGTCCTGATACCACCTAACTGTACAAGCTGAAGTCCCCTCTCGCCCTCTCCTTGCTGCTGCAAAGATCTCGGGCGGTGCCTCTGTGGACAATTGAGTCAACAGGCTTCCAGGAGGTTAGGATAGTCTTATTTATCTCAAATCTAAAAGCAAAATCCAGAGAGGACACGAAATTCTGTATTGGAACCGAGATTTGAGCTTTAAAATTAGATTTTATGGCCACCGATACCATGGTAGCGGATCCATACATGGACTCCTCAAGCGAATGCTCGGAATCTGAAGATGAAGGTACCGACGATTACAGGAAGGGAGGATACCATGCAGTTCGTTTGGGCGATTCGTTCAAGAATGGAAGATATATTGTGCAGCGAAAGCTCGGATGGGGTCATTTTTCTACTGTGTGGCTTGCTTGGGACCTCGAAGAAGCTAGATTTGTGGCTCTTAAGGTGCAGAAAAGTGCGCAACATTATGGAGAAGCAGCTATGGATGAGATCAACATCTTGAAGGAAATTGCAGAAGGAGATCCGGAAGATAGAAAAGGTGTTGTGAAATTGCTAGACCATTTCAAGCACGTTGGACCCAATGGGCAGCATGTTTGTATGGTTTTTGAGTATTTGGGTGACAGTTTGTTGTCATTGATAAAATATACTCGCTACCGAGGCCTTCCCTTGGACATTGTTCGGGAACTCTGCACCCCTATTTTAGTAGGATTGGATTATTTGCATCGAGAATTGTCAATTATTCACACTGATTTGAAACCTGAGAACATTCTTCTCTACTCTAATATCGATCCATCAAAAGATCCAAAGAACTCCAAGGAACCTCCCCTGCTTTCTCCTATTATAGATAAACCAAACCTACTTTTGAGGTCTTCCAGTACGAAAGACACAGTGAATGGAGCAATTTCAAGGACTCAGAAAAATAAATTAAAGAGAAAGGCTAAGAGGGCTGCAAACAACTGTGTGAGCAGTGTAATAGCTCGAGAAAAGGAATTAGATTCGGCTAATACTGACCACGGTAGTATAAGCAGTGGACAAACTGGTGTTTTAAACGCAGAAATCATTCTGGCTGGTGACTCAGCAGCTCAGCATGAGGCAGACAAAAAAAGCTCGTTATTCTGCCAAGATTCAGAGCCTCAAATCAATAGATTTGAGATGTAAAATAGTAGACTTGGGAAATGCCTGCTGGATTCATAAGCAGTTTACACCTGATATTCAGACACGGCAATATCGATCCCCAGAGGTTATTTTGGGTTCAAAGTATTCTACACCAGTTGACATGTGGTCATTTGCTTGCATAATTTTTGAACTGGCTACAGGTGATATGTTATTTGATCCTCAGAGTGCAGAAGGTTATGACCGCGATGAGGACCACCTTGCCCTGATGATGGAGCTTCTTGGAAAAATACCTCGTAAGATCGCCTTAGGTGGGAGCTATTCACGGGAACTATTTGACAGGCATGGGGATTTAAAGCACATTAGACGGCTTCGGTATTGGCCCTTGGATCGTATACTAGTCGAGAAATATAAGTTCAGTGAGAAAGATGCTGATGAACTTGCCAAATTTTTATGCCCATTAATGGATTTTGCTCCAGAGAAGAGGCCTACAGCAGCGCAATGCCTCCTCCACCCATGGCTTAAATGCAAGATGGAAGACACAAGGGATAGACAAAGAAGGGAGAGTGAAGGTGCAAAGGAGGTCATGGAGAAAGCTCAAGTTGCTATGAGTAATATGGCTATCAAAGGAACTCAGGCAGGGTTCAGCAGAACAGCAGTGCCAATCAGGGCAAGCAATCAGCAAACAAGCACAATGCTCAAGTGAGTAGATTTAAGAAAAAGTCTGGTCTTCTAGAGTTATCGTCATAAGGATGCCTCCAGGTAGATACAGAACTGTACATTGCCATGCTGGTCGTCTTTCAAAGAATAACTCATTATATATTTCATGCGTGGGTATTAATTTAGGATGATTGATTTTATGGAGGCCTATTTCAAACAATCGTACCTACAAGTGAGTTTCAGTTACAAGATTGGTCTCGTTGTTTCAGAATCTAAAGAGCTGGAGTGTCCATCTCGACCCCCATCTTTGATTATATCTGTCTCAACTTATCAAGAACTTAAAAAGGTTCAAGGCCTTGGTGCCATGATTGCAACTCTTTGTCTGGAGTTCAATGTTTAGATGATGTCAAAATTGTTACTCCTTGTCCATAGGATGCTCTGATTTATGGTAAGATTTAGTACAGGATGGTTTCTATTGGTTATACAGCGGTTCACTCTGATTTGTAAAAAAGAGCATTCACTCGGACTGTTGATGGGAGTGTGACTTGGAAGCAGAAAGGCACAGGCAAATGAGACGTGCACTTGGAAGTTTGTTATTAGGAACATGCTCACTTGGAGAGTGGTCTCATAGCAAACTTCCTAATTCGTTTTAGATGCAGCCATGTTATTCCTCTCAGCAATATAAGGGTGACTATATTATAATTCACTCTCCTCGGAATGTACGTTCAAACCTATATTGAATGACTTGATTTGCTACGAGAAAAAATGTGTCTACTTACCAGCTGCCACCACAGAATTCAAATGGTGCAGCTAATATTATTTTGTAAGTGAATTTAATGAGATTTTGCAAATGCTTTTCCA

Ace file of the UniGene sp_v1.1_unigene11789

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Srpk, putative n=1 Tax=Ricinus communis RepID=B9SRL4_RICCO	-	-	61%
FL-Next	tr=Srpk, putative; Ricinus communis (Castor bean).	-	-	64%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	78%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	78%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	78%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	78%
Blast2go	Protein kinase-like domain	IPR011009	-	78%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	78%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SRL4

Fln msg: Separated hits, possible frame ERROR between 1195 and 1221, your sequence is shorter than subject: 536 - 558

Fln protein: MATDTMVADPYMDSSSECSESEDEGTDDYRKGGYHAVRLGDSFKNGRYIVQRKLGWGHFSTVWLAWDLEEARFVALKVQKSAQHYGEAAMDEINILKEIAEGDPEDRKGVVKLLDHFKHVGPNGQHVCMVFEYLGDSLLSLIKYTRYRGLPLDIVRELCTPILVGLDYLHRELSIIHTDLKPENILLYSNIDPSKDPKNSKEPPLLSPIIDKPNLLLRSSSTKDTVNGAISRTQKNKLKRKAKRAANNCVSSVIAREKELDSANTDHGSISSGQTGVLNAxxxxxxxxxxLSMRQTKKARYSAKIQSLKSIDLRCKIVDLGNACWIHKQFTPDIQTRQYRSPEVILGSKYSTPVDMWSFACIIFELATGDMLFDPQSAEGYDRDEDHLALMMELLGKIPRKIALGGSYSRELFDRHGDLKHIRRLRYWPLDRILVEKYKFSEKDADELAKFLCPLMDFAPEKRPTAAQCLLHPWLKCKMEDTRDRQRRESEGAKEVMEKAQVAMSNMAIKGTQAGFSRTAVPIRASNQQTSTMLK*

Protein Length: 537

Fln nts: ATGGGGCAATTAGGTAAGAGCGAGTCCGAGTTTGGTGAAAGGCCTTCATTAAACCCCCGACGCCCACGCCCACCATGGGGGCTACACGGCCATGATTGCGGGGATTGAAAGCTTCGCCTTGGTCTCAACGACTCACTGCGGTCCTGATACCACCTAACTGTACAAGCTGAAGTCCCCTCTCGCCCTCTCCTTGCTGCTGCAAAGATCTCGGGCGGTGCCTCTGTGGACAATTGAGTCAACAGGCTTCCAGGAGGTTAGGATAGTCTTATTTATCTCAAATCTAAAAGCAAAATCCAGAGAGGACACGAAATTCTGTATTGGAACCGAGATTTGAGCTTTAAAATTAGATTTT_-_ATGGCCACCGATACCATGGTAGCGGATCCATACATGGACTCCTCAAGCGAATGCTCGGAATCTGAAGATGAAGGTACCGACGATTACAGGAAGGGAGGATACCATGCAGTTCGTTTGGGCGATTCGTTCAAGAATGGAAGATATATTGTGCAGCGAAAGCTCGGATGGGGTCATTTTTCTACTGTGTGGCTTGCTTGGGACCTCGAAGAAGCTAGATTTGTGGCTCTTAAGGTGCAGAAAAGTGCGCAACATTATGGAGAAGCAGCTATGGATGAGATCAACATCTTGAAGGAAATTGCAGAAGGAGATCCGGAAGATAGAAAAGGTGTTGTGAAATTGCTAGACCATTTCAAGCACGTTGGACCCAATGGGCAGCATGTTTGTATGGTTTTTGAGTATTTGGGTGACAGTTTGTTGTCATTGATAAAATATACTCGCTACCGAGGCCTTCCCTTGGACATTGTTCGGGAACTCTGCACCCCTATTTTAGTAGGATTGGATTATTTGCATCGAGAATTGTCAATTATTCACACTGATTTGAAACCTGAGAACATTCTTCTCTACTCTAATATCGATCCATCAAAAGATCCAAAGAACTCCAAGGAACCTCCCCTGCTTTCTCCTATTATAGATAAACCAAACCTACTTTTGAGGTCTTCCAGTACGAAAGACACAGTGAATGGAGCAATTTCAAGGACTCAGAAAAATAAATTAAAGAGAAAGGCTAAGAGGGCTGCAAACAACTGTGTGAGCAGTGTAATAGCTCGAGAAAAGGAATTAGATTCGGCTAATACTGACCACGGTAGTATAAGCAGTGGACAAACTGGTGTTTTAAACGCAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTCAGCATGAGGCAGACAAAAAAAGCTCGTTATTCTGCCAAGATTCAGAGCCTCAAATCAATAGATTTGAGATGTAAAATAGTAGACTTGGGAAATGCCTGCTGGATTCATAAGCAGTTTACACCTGATATTCAGACACGGCAATATCGATCCCCAGAGGTTATTTTGGGTTCAAAGTATTCTACACCAGTTGACATGTGGTCATTTGCTTGCATAATTTTTGAACTGGCTACAGGTGATATGTTATTTGATCCTCAGAGTGCAGAAGGTTATGACCGCGATGAGGACCACCTTGCCCTGATGATGGAGCTTCTTGGAAAAATACCTCGTAAGATCGCCTTAGGTGGGAGCTATTCACGGGAACTATTTGACAGGCATGGGGATTTAAAGCACATTAGACGGCTTCGGTATTGGCCCTTGGATCGTATACTAGTCGAGAAATATAAGTTCAGTGAGAAAGATGCTGATGAACTTGCCAAATTTTTATGCCCATTAATGGATTTTGCTCCAGAGAAGAGGCCTACAGCAGCGCAATGCCTCCTCCACCCATGGCTTAAATGCAAGATGGAAGACACAAGGGATAGACAAAGAAGGGAGAGTGAAGGTGCAAAGGAGGTCATGGAGAAAGCTCAAGTTGCTATGAGTAATATGGCTATCAAAGGAACTCAGGCAGGGTTCAGCAGAACAGCAGTGCCAATCAGGGCAAGCAATCAGCAAACAAGCACAATGCTCAAGTGA___GTAGATTTAAGAAAAAGTCTGGTCTTCTAGAGTTATCGTCATAAGGATGCCTCCAGGTAGATACAGAACTGTACATTGCCATGCTGGTCGTCTTTCAAAGAATAACTCATTATATATTTCATGCGTGGGTATTAATTTAGGATGATTGATTTTATGGAGGCCTATTTCAAACAATCGTACCTACAAGTGAGTTTCAGTTACAAGATTGGTCTCGTTGTTTCAGAATCTAAAGAGCTGGAGTGTCCATCTCGACCCCCATCTTTGATTATATCTGTCTCAACTTATCAAGAACTTAAAAAGGTTCAAGGCCTTGGTGCCATGATTGCAACTCTTTGTCTGGAGTTCAATGTTTAGATGATGTCAAAATTGTTACTCCTTGTCCATAGGATGCTCTGATTTATGGTAAGATTTAGTACAGGATGGTTTCTATTGGTTATACAGCGGTTCACTCTGATTTGTAAAAAAGAGCATTCACTCGGACTGTTGATGGGAGTGTGACTTGGAAGCAGAAAGGCACAGGCAAATGAGACGTGCACTTGGAAGTTTGTTATTAGGAACATGCTCACTTGGAGAGTGGTCTCATAGCAAACTTCCTAATTCGTTTTAGATGCAGCCATGTTATTCCTCTCAGCAATATAAGGGTGACTATATTATAATTCACTCTCCTCGGAATGTACGTTCAAACCTATATTGAATGACTTGATTTGCTACGAGAAAAAATGTGTCTACTTACCAGCTGCCACCACAGAATTCAAATGGTGCAGCTAATATTATTTTGTAAGTGAATTTAATGAGATTTTGCAAATGCTTTTCCA

Fln Alignment:

sp_v1.1_unigene11789___YRKGGYHAVRLGDSFKNGRYIVQRKLGWGHFSTVWLAWDLEEARFVALKVQKSAQHYGEAAMDEINILKEIAEGDPEDRKGVVKLLDHFKHVGPNGQHVCMVFEYLGDSLLSLIKYTRYRGLPLDIVRELCTPILVGLDYLHRELSIIHTDLKPENILLYSNIDPSKDPKNSKEPPLLSPIIDKPNLLLRSSSTKDTVNGAISRTQXXXXXXXXXXXXXXCVSSVIAREKELDSANTDHGSIS-SGQTGVLNAExxxxxxxxxLSMRQTKKARYSAKIQSLKSIDLRCKIVDLGNACWIHKQFTPDIQTRQYRSPEVILGSKYSTPVDMWSFACIIFELATGDMLFDPQSAEGYDRDEDHLALMMELLGKIPRKIALGGSYSRELFDRHGDLKHIRRLRYWPLDRILVEKYKFSEKDADELAKFLCPLMDFAPEKRPTAAQCLLHPWLKCKMEDTR----DRQRRESEGA-------KEVMEKAQVAMSNMAI
B9SRL4_______________YRRGGYHAVRIGDSFKNGRYVVQGKLGWGHFSTVWLAWDTLKPQFVALKVQKSAQHYTEAAMDEITILQQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPINKVKEICFHILVGLDYLHRQLSIIHTDLKPENILLLSMIDPIKDPRKSGAPLILPSSKDKTAL----ESGIVRLNGDLTRNQKKKIRRKAKRAAQGCVEKEASAEVDADPETSVAEELSANAKTNVGSAExxxxxxxxxLDNQGNKRGSRSTRQKLLASVDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYEFSEKDANDMTDFLVPILDFVPEKRPTAAQCLLHPWISSGPRSLEPSMPSHQNEASEGVNSEKKREKDEREAMEKGMGNIAI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
508	33		66		0.997452
543	16			83	0.994512
547			16	83	0.994512
548			16	83	0.994512
558	88		11		0.923564
826		71		28	1.0
1480	16		83		0.994512
1657	30	70			1.0
1840		88	11		0.923564
2746	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain