SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11785

Length: 410 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11785
CGTCGTGACCTTGGCTGTCACTCAATGTTTGTCCATGATGGTCTTGTTCATCGCCGCTTTCCTGTTGGGCCTATTGCTGATGTTCCATATCTTCTTAAGGTAGCAGCTGCACATCAGCTTCATCACGCAAACAAGTTTAATGGTGTACCATATGGTCTTTTCCTTGGACCAAAAGAACTGGAAGAGGAGGTTGGAGGCCGTGAAGAGCTAGAGAAATTGTATAATAGTAAAATAAAGGGCGTCCAAAAGCTTCAGTGAAGGCTCTGACTTTCCTGCTTGTGTTATTTGGCACTAATTTTCCCATTTTATATCTACGTTCATAGGCAACTCCAAGTTCCTTGAGAGGTAAATTTGTACACACTATGAGAGTAACCTTTGGCATGCAAATTAGTATTTGAGACGAGAGTCTT

Ace file of the UniGene sp_v1.1_unigene11785

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-carotene hydroxylase n=4 Tax=Arabidopsis RepID=Q9SZZ8_ARATH	-	-	5.0e-21	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	beta-carotene hydroxylase	-	-	6.67148e-26	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	6.67148e-26	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	6.67148e-26	89%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	6.67148e-26	89%
Blast2go	iron ion binding	GO:0005506	Molecular Function	6.67148e-26	89%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	6.67148e-26	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXM1

Fln msg: your sequence is shorter than subject: 86 - 330

Fln protein: RRDLGCHSMFVHDGLVHRRFPVGPIADVPYLLKVAAAHQLHHANKFNGVPYGLFLGPKELEEEVGGREELEKLYNSKIKGVQKLQ*

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTTGTCCATGATGGTCTTGTTCATCGCCGCTTTCCTGTTGGGCCTATTGCTGATGTTCCATATCTTCTTAAGGTAGCAGCTGCACATCAGCTTCATCACGCAAACAAGTTTAATGGTGTACCATATGGTCTTTTCCTTGGACCAAAAGAACTGGAAGAGGAGGTTGGAGGCCGTGAAGAGCTAGAGAAATTGTATAATAGTAAAATAAAGGGCGTCCAAAAGCTTCAGTGA___AGGCTCTGACTTTCCTGCTTGTGTTATTTGGCACTAATTTTCCCATTTTATATCTACGTTCATAGGCAACTCCAAGTTCCTTGAGAGGTAAATTTGTACACACTATGAGAGTAACCTTTGGCATGCAAATTAGTATTTGAGACGAGAGTCTT

Fln Alignment:

sp_v1.1_unigene11785___GCHSMFVHDGLVHRRFPVGPIADVPYLLKVAAAHQLHHANKFNGVPYGLFLGPKXXXXXXXXXXXXXKLYNSKIKGVQKLQ
A9NXM1_______________GMAYMFVHDGLVHRRFPVGPIADVPYLLKVAAAHQLHHADKFNGVPYGLFLGPK-ELEEVGGRGELEKLFNSKKKGLQKLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain