SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11781

Length: 2214 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11781
CGTCGTGACCTTGGCTGTCACTCAAAATTTTTAACCCACTCGCTAACCTGAGACAGACCACGAAGAAAAATATTTTTGTACCAGAGAAATAAAGCAGCAGGGTAAGGGTAAACGTTATCCCGATCTTCAAATCCAAACCCTCGTCTGCTCTATCCAATTCCTCGATCCATCTGCCCGTTGAAGGGGCAGGCCGAAATTTCCTCTTTTTTCGGCTCTTCGCCGGCTTATTTTGGATGATTTCAGGCTTCTGAGCATAACCATGCCTCCCAAGCAGCAGTCCAAGGCCGATGTAGCCAAAAAAAGCGAAGGTCGTCGAGGACAAGACCTTCGGCCTCAAGAACAAGAACAAGAGCAAAAATGTTCAGAAATATGTCCAGAGCCTTAAGCAATCGGTGCAGCCCAAAGCCGACCCCAAACTTAATACAGCCAAGCAAAAGAGGAAGAGGAGAAGAAGAGGGAGAAGGAACTGAGCGACCTATTTAAAGTTGCTGTCAGTCAGCCGAAAGTTCCACCCGGTGTTGATCCCAAATCTATAGTATGTGAATTCTTTAAGGCTGGGCAATGTGGCAAGGGTTTTAAGTGCAAATTCTCCCACGACTTGAATGTACAGAGAAAGGGTGAAAAGATTGACATATATAGTGATAAGCGAGATGAAGAAACTATGGACGATTGGGACCTGGAGACGCTTGAAAAGGTTGTAGAATCCAAGAAAACGGAATATAACCAGAACAAGCCAACGGATATTGTATGTAAATACTTTTTGGAAGCTGTGGAAAAAAAACAATATGGTTGGTTTTGGACTTGTCCCAATGGAGGAAAAGAATGTCACTATAGACATGCTCTGCCTCCTGGTTATGTATTAAAGTCTCAAATGAAGGCTTTGTTAGACGAAGAGACGCAGAAGATTTCAATTGAAGAAGAGATTGAAAATCAGAGACGACAAACAAAAACTACGACTCCCCTTAATGGTGACTTATTTTATGAATGGAAGAAGAAAAAGACAGACCAGAAGGAAGCTGAGCTTGCTGCCAAGAGAGCTGAGAGAGCGAAAAATGATCGCATGAGTGGGCGTGAATTATTCCTTTCGGATGCAAGCTTGTTTGTTGATGATGCCGAGGCTTACGAAAAGTACAATAGGGAAGATGAAGAAGATCGGGCCAAGGAGGTGAAGAAGAACCCAAGTCCTTCAACGGCAGAAACCTCAACTTCTGGGGTTACAGCTGAAGAAGAGGAGCAAATACTAGCTGAAGATGATGATGAATTGGACCTTGATGAATTGGACGAGCTAGAAGCTAGCATAGCAAAGACTTCTCTCGAGACAAATGGCAACTCTGCAAACCCAATAAAAGATTGTTAAAGTATCATTTGACACTTCTCTCTTGAAATTCCTTGTGAGATATGGCATTAGAAAAATGACATATATATGCAAAAGCACCCAGTGTGGGTAGTCTTACAAGGAGGTGTCTGCTGCATAGCATGTTTGCAGGTTAAGGTGGTATATTGCTGCATAGAGTTTTAGCAGGTTGGTTCGATCTGTAGTTGTCTGACTATCATTGAAAATTGATCCATGTTTTCTGCGGGCACATGCAAAAGAGATTACTGCACAAGTTAGATGACAAGTTTTCTACTGTTATTTCTGATCACATTAGCTTGATTGAGAAAGCTTCTTCGTTACCAGTGAGCTCTTCTGATCAAGTTGATATTCTCGTCTGATGCGAGTTATAGTACACATTATCTATATATTGTGGTACTAATATATTTTGTTTTCTCCTGAACAAAAGAGCCATGTTCTATGCTTGTAAGTTTGTTTCAAAATTTGTAAGCATTCTGGCAGTTATTCCAATCTCTCTTTCTTCATGGACAGTTTGTTACAGGCAAAAAACATAACATGTGATGACCATACGGATGCTTTCTATGGGACAATGTCTGGCCTTTTTGTATTGCCAGGAATCCCTTCTAAGTTGGCACTGGTTGTCTCGTAAAATGTGTCTCTAGATTTGATTCTGTCCAGATCTTTTGGCTTGGAAATGAATTATTGCCCGCTTAAACCGACATCATTAAACAAGTGGAGAGTTGTCTCTTGTTTGTAACGAAGTTGCTAGCGAGTGAAAGGCCAAATAGCCCACTATAGCAACTTTACAATACCATTTTGTTTGTCGCTTTTGGTTGTCATCTTGGCTTTGCCAATTAACTTAGTGAATTGATTGAACTTAC

Ace file of the UniGene sp_v1.1_unigene11781

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SGS6_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	76%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSL9

Fln msg:

Fln protein: MPPKQQSKADVAKKSEGRRGQDLRPQEQEQEQKCSEICPEP*AIGAAQSRPQT*YSQAKEEEEKKREKELSDLFKVAVSQPKVPPGVDPKSIVCEFFKAGQCGKGFKCKFSHDLNVQRKGEKIDIYSDKRDEETMDDWDLETLEKVVESKKTEYNQNKPTDIVCKYFLEAVEKKQYGWFWTCPNGGKECHYRHALPPGYVLKSQMKALLDEETQKISIEEEIENQRRQTKTTTPLNGDLFYEWKKKKTDQKEAELAAKRAERAKNDRMSGRELFLSDASLFVDDAEAYEKYNREDEEDRAKEVKKNPSPSTAETSTSGVTAEEEEQILAEDDDELDLDELDELEASIAKTSLETNGNSANPIKDC*

Protein Length: 367

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTTTTAACCCACTCGCTAACCTGAGACAGACCACGAAGAAAAATATTTTTGTACCAGAGAAATAAAGCAGCAGGGTAAGGGTAAACGTTATCCCGATCTTCAAATCCAAACCCTCGTCTGCTCTATCCAATTCCTCGATCCATCTGCCCGTTGAAGGGGCAGGCCGAAATTTCCTCTTTTTTCGGCTCTTCGCCGGCTTATTTTGGATGATTTCAGGCTTCTGAGCATAACC_-_ATGCCTCCCAAGCAGCAGTCCAAGGCCGATGTAGCCAAAAAAAGCGAAGGTCGTCGAGGACAAGACCTTCGGCCTCAAGAACAAGAACAAGAGCAAAAATGTTCAGAAATATGTCCAGAGCCTTAAGCAATCGGTGCAGCCCAAAGCCGACCCCAAACTTAATACAGCCAAGCAAAAGAGGAAGAGGAGAAGAAGAGGGAGAAGGAACTGAGCGACCTATTTAAAGTTGCTGTCAGTCAGCCGAAAGTTCCACCCGGTGTTGATCCCAAATCTATAGTATGTGAATTCTTTAAGGCTGGGCAATGTGGCAAGGGTTTTAAGTGCAAATTCTCCCACGACTTGAATGTACAGAGAAAGGGTGAAAAGATTGACATATATAGTGATAAGCGAGATGAAGAAACTATGGACGATTGGGACCTGGAGACGCTTGAAAAGGTTGTAGAATCCAAGAAAACGGAATATAACCAGAACAAGCCAACGGATATTGTATGTAAATACTTTTTGGAAGCTGTGGAAAAAAAACAATATGGTTGGTTTTGGACTTGTCCCAATGGAGGAAAAGAATGTCACTATAGACATGCTCTGCCTCCTGGTTATGTATTAAAGTCTCAAATGAAGGCTTTGTTAGACGAAGAGACGCAGAAGATTTCAATTGAAGAAGAGATTGAAAATCAGAGACGACAAACAAAAACTACGACTCCCCTTAATGGTGACTTATTTTATGAATGGAAGAAGAAAAAGACAGACCAGAAGGAAGCTGAGCTTGCTGCCAAGAGAGCTGAGAGAGCGAAAAATGATCGCATGAGTGGGCGTGAATTATTCCTTTCGGATGCAAGCTTGTTTGTTGATGATGCCGAGGCTTACGAAAAGTACAATAGGGAAGATGAAGAAGATCGGGCCAAGGAGGTGAAGAAGAACCCAAGTCCTTCAACGGCAGAAACCTCAACTTCTGGGGTTACAGCTGAAGAAGAGGAGCAAATACTAGCTGAAGATGATGATGAATTGGACCTTGATGAATTGGACGAGCTAGAAGCTAGCATAGCAAAGACTTCTCTCGAGACAAATGGCAACTCTGCAAACCCAATAAAAGATTGTTAA___AGTATCATTTGACACTTCTCTCTTGAAATTCCTTGTGAGATATGGCATTAGAAAAATGACATATATATGCAAAAGCACCCAGTGTGGGTAGTCTTACAAGGAGGTGTCTGCTGCATAGCATGTTTGCAGGTTAAGGTGGTATATTGCTGCATAGAGTTTTAGCAGGTTGGTTCGATCTGTAGTTGTCTGACTATCATTGAAAATTGATCCATGTTTTCTGCGGGCACATGCAAAAGAGATTACTGCACAAGTTAGATGACAAGTTTTCTACTGTTATTTCTGATCACATTAGCTTGATTGAGAAAGCTTCTTCGTTACCAGTGAGCTCTTCTGATCAAGTTGATATTCTCGTCTGATGCGAGTTATAGTACACATTATCTATATATTGTGGTACTAATATATTTTGTTTTCTCCTGAACAAAAGAGCCATGTTCTATGCTTGTAAGTTTGTTTCAAAATTTGTAAGCATTCTGGCAGTTATTCCAATCTCTCTTTCTTCATGGACAGTTTGTTACAGGCAAAAAACATAACATGTGATGACCATACGGATGCTTTCTATGGGACAATGTCTGGCCTTTTTGTATTGCCAGGAATCCCTTCTAAGTTGGCACTGGTTGTCTCGTAAAATGTGTCTCTAGATTTGATTCTGTCCAGATCTTTTGGCTTGGAAATGAATTATTGCCCGCTTAAACCGACATCATTAAACAAGTGGAGAGTTGTCTCTTGTTTGTAACGAAGTTGCTAGCGAGTGAAAGGCCAAATAGCCCACTATAGCAACTTTACAATACCATTTTGTTTGTCGCTTTTGGTTGTCATCTTGGCTTTGCCAATTAACTTAGTGAATTGATTGAACTTAC

Fln Alignment:

sp_v1.1_unigene11781___MPPKQQSKADVAKKSE-------GRRGQDLRPQEQEQEQKCSE-ICPEP*A-IGAAQSRPQT*YSQAXXXXXXXXXXXLSDLFKVAVSQPKVPPGVDPKSIVCEFFKAGQCGKGFKCKFSHDLNVQRKGEKIDIYSDKRDEETMDDWDLETLEKVVESKKTEYNQNKPTDIVCKYFLEAVEKKQYGWFWTCPNGGKECHYRHALPPGYVLKSQMKALLDEETQKISIEEEIENQRRQTKTTTPLNGDLFYEWKKKKTDQXXXXXXXXXXXXXXNDRMSGRELFLSDASLFVDDAEAYEKYNREDEEDRAKEVKKNPSPSTAETSTSGVTXXXXXXXXXXXXXXXXXXXXXXXXXSIAKTSLETNGNSANPIKDC
C0PSL9_______________MPPKQQSKADVAKKQKVVEDKTFGLKNKNKSKNVQKYVQGLKQSVQPKPDSKVNAAKQKKED---------EKKREKELNDLFKVAVSQPKVPPGVDPKSIVCEFFKAGQCGKGFKCKFSHDLNVQRKGEKIDLYSDKRDEDTMDDWDLETLEKVVESKKNEYNQNKPTDIVCKYFLEAVEKKQYGWFWTCPNGEKECHYRHALPPGYVLKSQMKALLEEETQKISIEEEIENQRRQTKTTTPLNGDLFYEWKKKKTDQKEAELAAKRAERAKNDRMSGRELFLSDASLFVDDAEAYEKYNREDEEDRAKEVKKNPSSSTAETSTSGVTAEEEEQILAEDDDELDLDELDELEASIAKTSLETNDNGANPIKNC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
46	75			25	0.996473
48		75		25	0.996473
120		87	12		0.992554
121		87	12		0.992554
370	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain