SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11735

Length: 682 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene11735 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase n=2 Tax=rosids RepID=B9SXC0_RICCO	-	-	76%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	dna-directed rna polymerase ii largest	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Pyrimidine metabolism	00240	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	transcription from RNA polymerase II promoter	GO:0006366	Biological Process	85%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	85%
Blast2go	DNA binding	GO:0003677	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA polymerase Rpb1, domain 1	IPR007080	-	0.0	85%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
458		80	20		0.995493
563		25		75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain