SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11717

Length: 1155 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11717

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone protein dnaJ, putative	-	-	1.00053e-42	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	70%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	70%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	70%
Blast2go	plastid	GO:0009536	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	70%
Blast2go	Heat shock protein DnaJ	IPR003095	-	70%
Blast2go	Heat shock protein DnaJ, conserved site	IPR018253	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A5BDU1

Fln msg:

Fln protein: MLCKYAFAMGVPWGGRLPVNNMSTTARVTVCLHSNITVSSNANRRVRRLRMVGVRASNNNKRRAESESPYEVLGVSVAASPQEIKSAYRKLALKYHPDVNKEPNAQEKFMRIKHAYNTLLDSNSRLKYDFRKHRADSRQTSKKGFQKEFEDEEEFYGFEDFFQDLQTEFRNWEASADTQGKPKSLWEELAELGEDFVEFLEKELNINDQINEDETSDGQEKRNRSEDINSSLTEDYSVKKNGQQNKLEADIDEIEAALAKLKRELGL*

Protein Length: 269

Fln nts: ATGGGGTAAACCATCTATACATTAATTCTGAAAGCTCAGGCGTAATTAAATTTCCACGAATAACTTAAATACTAATCAAAATGTCGCTTTACATCATTGGATTATATGTTTACAGCAATCTCTAATGAGCAGACAGGTGGAAGCCTTGTTCGGATATGAAAACCATTTCAAATGCTAACCATATTTAAAAGCTTCTGCATGTGTGTGTGAAGAGATATGCTGCGTGTGAAATATATACAGGCAAACCG_-_ATGTTATGTAAGTATGCTTTTGCGATGGGCGTACCATGGGGCGGGAGACTACCAGTGAACAATATGAGCACGACTGCGCGTGTGACTGTGTGCCTCCATTCTAACATCACCGTCAGTAGCAATGCCAATAGGAGAGTGAGAAGACTGAGAATGGTGGGTGTTAGAGCAAGCAATAATAATAAGAGGAGGGCTGAATCTGAATCTCCATACGAGGTGCTGGGTGTATCAGTGGCCGCATCTCCCCAAGAAATTAAATCAGCTTACAGAAAATTGGCCCTTAAATACCATCCAGACGTCAACAAGGAGCCAAATGCGCAGGAAAAATTTATGCGCATTAAGCATGCATATAATACTTTGTTGGACTCAAATTCTCGTCTTAAGTATGACTTTAGAAAACATCGCGCTGATTCACGTCAAACATCTAAAAAGGGTTTCCAAAAGGAATTTGAAGATGAAGAAGAGTTCTATGGATTTGAGGACTTCTTCCAGGATTTACAAACAGAGTTTCGTAACTGGGAAGCTAGCGCAGATACACAAGGCAAACCAAAGAGCTTGTGGGAAGAGCTTGCTGAGCTTGGAGAAGATTTCGTTGAATTTTTAGAGAAGGAATTGAATATTAATGATCAAATCAATGAAGATGAAACATCAGATGGACAGGAGAAAAGAAATAGAAGTGAAGACATCAATTCAAGTTTGACTGAAGATTATTCCGTTAAGAAAAATGGTCAACAAAACAAACTAGAAGCTGACATTGATGAAATTGAAGCTGCATTAGCCAAGTTGAAAAGGGAGTTGGGACTTTAG___GGTGTTACTACCAGCTCGGAGCTTACGTTCCCTAGAGTAAGTTCTGTATCTATAGACTTTGATGAATATTCTCCATTAGCCAATTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene11717___SNNNKRR-------AESESPYEVLGVSVAASPQEIKSAYRKLALKYHPDVNKEPNAQEKFMRIKHAYNTLLDSNSRLKYDFRKHRADSRQTSXXXXXXXXXXXXXXXXXXXXXXXLQTEFRNWEASADTQGKPKSLWEELAELGEDFVEFLEKELNINDQINEDETSDGQEKRNRSEDINSSLTEDYSVKKNGQQNXXXXXXXXXXXXXXXLKRELGL
A5BDU1_______________NGKNKRRNXTLLKASRRESPYEVLGVSPSASPDQIKRAYRKLALKYHPDVNKEANAQEKFMRIKHAYNALMNSESRRKYDSGSRASNYTYSNAERNQSRDTQEEEFYGFEDFFRDLQEEFRNWEASAASQGKPKSLWEELAEIGEEFVEFLEKELNITDSEVEAEEYGGSQKENPFTSSETGTTGGGGQSKGGQGSSIEENIDEIEATLAKLKKELGL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
706	87		12		0.992554
750		75	25		1.0
887	12		87		0.992554
913	83		16		0.994512
914	83			16	0.994512
915		16	83		0.994512
920	80			20	0.995493
924			75	25	0.996473
928	75			25	0.996473
930	75			25	0.996473
932	75			25	0.996473
936	88	11			0.923564
1136	66		33		1.0
1137	66	33			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain