SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11713

Length: 1048 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11713

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavin reductase like domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VPP3_9CYAN	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	flavoprotein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	electron transport chain	GO:0022900	Biological Process	77%
Blast2go	transport	GO:0006810	Biological Process	77%
Blast2go	metal ion binding	GO:0046872	Molecular Function	77%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	77%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	77%
Blast2go	FMN binding	GO:0010181	Molecular Function	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNF7

Fln msg: Overlapping hits, possible frame ERROR between 800 and 770, Unexpected STOP codon at 3' end. Distance to subject end: 207 aas, your sequence is shorter than subject: 275 - 483

Fln protein: MAVSASVLGTYSFMRTSSSPMAFEIFTEKPKRKPFDRIHRGFFWPTLKKPTLTRSRRKPKPSISMSLSNVTVLEKRRLQTQTITSIAPDVTTIRSLDWDRDRFDIEFGLQNGTTYNSFIINADKLTIIDASHEKFKGLYLSAIKELIDPSVIEYIVANHTEPDHSGLIPDLLDLAPNATVVGxxxxxxxxxxxxLRPFKSLVVKGGSTLDLGRGHLLEFVMAPNLHWPDTMFTLDHGSGILFTCDAFGMHYCSELVYDEDLGAIEPHYRFYYDV*

Protein Length: 276

Fln nts: GAAGGATATTATTTCTTGTGGACGATTGTTTGATTATCAGAGTAAACTTCTGAGTGAATTGAGAGGGCTCGGCCATCCATGGATATTGAGTCGTGAATTAAACGTGGAGGCTCGAGAACGAGACCCCATCCAAGGTCTCTTGAGGAGCAGCAGCAGCGAAACTAAAGATTTTGTTCGTTGACGATTGATAAACTGTGCAGAGGACGCAGCAATTTGCAGGC_-_ATGGCTGTTTCAGCTTCAGTTTTAGGAACATATTCCTTCATGAGAACGAGTAGTTCTCCAATGGCTTTTGAAATATTCACAGAAAAACCTAAACGTAAACCTTTCGATCGAATCCATAGAGGCTTCTTTTGGCCAACCTTGAAGAAGCCAACCCTGACAAGGAGCAGAAGGAAGCCGAAGCCGTCAATTTCAATGTCATTGTCAAATGTAACTGTGTTGGAGAAGCGTCGTCTGCAGACTCAAACGATAACTAGCATTGCTCCCGATGTGACTACCATCAGGTCTTTGGATTGGGACCGAGATCGCTTTGACATAGAATTCGGCTTGCAGAATGGGACTACATACAATTCTTTTATAATCAATGCAGATAAGTTGACTATTATTGATGCTTCGCATGAAAAATTTAAAGGTCTTTACCTTTCAGCAATCAAGGAACTCATTGATCCAAGTGTGATTGAGTACATTGTAGCAAATCACACAGAACCCGACCACAGTGGTCTCATTCCTGATCTCTTAGATCTTGCACCAAATGCAACAGTTGTTGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTACGCCCATTCAAAAGCTTAGTTGTGAAAGGAGGCAGTACCTTGGACTTGGGAAGGGGACACCTTCTGGAGTTTGTTATGGCACCTAACTTGCATTGGCCTGACACTATGTTTACCCTTGACCATGGATCTGGAATTCTATTTACTTGCGATGCATTTGGGATGCATTATTGTTCTGAGTTGGTGTATGATGAAGACTTGGGTGCAATAGAACCACACTATAGGTTCTATTATGATGTTTGATGA

Fln Alignment:

sp_v1.1_unigene11713___MAVSASVLGTYSFMRTSSSPMAFEIFTEKPKRKPFDRIHRGFFWPTLKKPTLTRSRRKPKPSISMSLSNVTVLEKRRLQTQTITSIAPDVTTIRSLDWDRDRFDIEFGLQNGTTYNSFIINADKLTIIDASHEKFKGLYLSAIKELIDPSVIEYIVANHTEPDHSGLIPDLLDLAPNATVVGSxxxxxxxxxxVLRPFKSLVVKGGSTLDLGRGHLLEFVMAPNLHWPDTMFTLDHGSGILFTCDAFGMHYCSELVYDEDLGAIEPHYRFYYD
B8LNF7_______________MAVSTSALGTYSWMRTSSSPMAFELFTRKPKLQSFDRVHRGLFWPTLKKPTVTRSGRKPKPSISMSLSDVNVLEKRRLQTQTITSIAPDVTTIRSLDWDRDRFDIEFGLQNGTTYNSFIINADKLTIIDASHEKFKGLYLSAIKEHIDPSAIEYIIANHTEPDHSGLIPDLLDLAPNATVVGSxxxxxxxxxxVLRPFKSLVVKGGSTLDLGRGHLLEFVMAPNLHWPDTMFTLDHGAGILFTCDAFGMHYCSELLYDEDLGAIEPHYRFYYD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
667		66		33	0.997452
671		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
146	157	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain