SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11710

Length: 687 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11710

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair helicase UVH6	-	-	93%
FL-Next	sp=DNA repair helicase UVH6; Arabidopsis thaliana (Mouse-ear cress).	-	-	90%
Blast2go	protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-excision repair	GO:0006289	Biological Process	92%
Blast2go	response to heat	GO:0009408	Biological Process	92%
Blast2go	response to UV	GO:0009411	Biological Process	92%
Blast2go	DNA binding	GO:0003677	Molecular Function	92%
Blast2go	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
340	90	10			0.90298
342		10	90		0.90298
347	10	90			0.90298
375		11		88	0.923564
391	88	11			0.923564
393		88		11	0.923564
394	88	11			0.923564
395		88	11		0.923564
400	77			22	0.999999
407		11		88	0.923564
410	88			11	0.923564
446		88		11	0.923564
543	66		33		1.0
552		66		33	1.0
568	33		66		0.997452
606	66			33	0.997452
607	33		66		0.997452
608			33	66	0.997452
611			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain