SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11703

Length: 948 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11703

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cyclin-related	-	-	2.0e-18	36%
FL-Next	tr=Hydrolase, acting on ester bonds, putative; Ricinus communis (Castor bean).	-	-	0.0	42%
Blast2go	acting on ester	-	-	8.31425e-40	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SPK9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 311 aas, your sequence is shorter than subject: 209 - 960

Fln protein: QLGGPSAPFPAVPPILPSGHQFDHPYMSLPHPIPGPPAHLFGRVPGPQTGPGFRPNLPPIGGPFGIGPGSPGLPPGPAGMVGPAFMGENNGAFGVPERPKKAFVPNWLREELMKNKAVVVANTSAQGLALEDSFPASRSEDANRSFRKADLADSKSVDSGRSSDDEDDEEDELEAARTAAINQEIKRVLTEVLLKVTDDLLMKLPRKF*

Protein Length: 210

Fln nts: TCAGTTAGGTGGTCCTAGTGCACCGTTTCCAGCTGTTCCTCCTATCCTTCCTTCTGGTCATCAGTTTGATCATCCATACATGTCTCTACCTCATCCAATCCCTGGGCCTCCTGCACATTTATTTGGAAGAGTCCCTGGACCTCAGACTGGACCTGGCTTTCGTCCAAATCTGCCACCCATTGGTGGACCTTTTGGCATAGGACCAGGCAGCCCAGGCCTACCTCCTGGACCAGCTGGGATGGTTGGGCCTGCTTTTATGGGAGAGAATAATGGGGCTTTTGGTGTCCCTGAACGACCCAAAAAGGCATTTGTGCCTAACTGGCTGAGAGAAGAACTCATGAAAAATAAAGCTGTGGTTGTTGCAAATACCTCGGCACAGGGTTTAGCATTAGAAGATTCTTTCCCTGCAAGCAGATCTGAAGATGCAAATAGATCCTTTCGCAAAGCTGACCTTGCAGACAGCAAAAGTGTTGATTCTGGGCGTTCTAGTGATGATGAAGATGATGAAGAGGATGAGTTGGAAGCAGCAAGAACTGCTGCTATCAATCAGGAAATTAAACGTGTATTGACTGAAGTGTTATTGAAGGTCACAGACGATCTTTTGATGAAATTGCCCAGGAAGTTCTAGACGAGGATGATCATAGTGCTCAAGTTAAGAGGCATGCTGCAAGTGACCGTAGTAGAATGAAAGTTTTCTCAAAGTCATCTCCACCACCTCCACCTTTTCAAACCCCAGTGGCATCTGCAAGGGTGCTTGTTGCAGCCAGCAATGCCACTGCAGTTAATGGGGATGACACTGAAAAATCAAATTCAGGTGCGCCTGGTGAGAACCTTCTTGGTCTTGCAAACTATGCTTCAGATGAGGATGATGAAACAGATCAAGCTAGACATCATGTGTCATCTCAGGGTCCAGAGCAACAGGAGGGTGGTTTGATGGAAGATGGAAAT

Fln Alignment:

sp_v1.1_unigene11703___FPAVPPILPSGHQFDHPYMSLPHPIPGPPAHLFGRVPGPQTGPGFRPNLXXXXXXXXXXXXXXXXXXXXXXMVGPA--------FMGENNGAFGVPERPKKAFVPNWLREELMKNKAVVVANTSAQGLALEDSFPASRSEDANRSFRKADLADSKSVDSGRSSXXXXXXXXXXXAARTAAINQEIKRVLTEVLLKVTDDLLMKLPRK
B9SPK9_______________YAPIPPGLPSGHQHD-PSVAMPSPVSGQAALPFGSFPGPN----FQPTISAVGLSYG---------------VGPGSALHATAGFVGDAYGVSNLSERPKKASVPNWLKEEIIKNASVISRSSLEHP---KEETQSIEDECVDRLYVKGDQADSKSIDSSRSTEEEDEDEDDDEAARTAAINQEIKRVLTEVLLKVTDELFDEIATK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
273	33			66	0.997452
274	33		66		0.997452
525	66		33		0.997452
781	33		66		0.997452
782		66		33	0.997452
783	66		33		0.997452
785			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain