SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11699

Length: 3176 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11699
ATGGGATCCAAGGGCACCCTGTGAAACCCTTGCCCCCCTTTGTCTTCTACGCCTTCGTTTCATTTCATTTCATTCATTCCCTTTCTTCCTCCTTCGCTGTTCTTGTGCTGATGATTTGGTTCGAGGAATGCGTAGGAGAGGATTTTCTTAGGAGAAGATTTTGATTTTTATGATTGATCTCTCCTGAGCTCGGATTTCCGCCGCCATAACTCAAATTTCAAAGCTCGAAGCCATAGGGTTCAGATGGTGCTCTAAATCCCCTGTCATGTCCAGATCTGTGCTGTACGGGGTTTTTAAATGGTTTGATTCGAACCATTGACCTCACGGCTTCAGCTGAAACCCTCAATCCTTTGCTCTGAAGCCGGCCGCGCAGCTGGAGAATACGAAGACACAGCTGATCTGACGGCCAGGGCGCTTCTAGGTCGTCTTCTCTTGAGATACTCTACAAAAATTGTCAGTAACCTGTTAGTAGTGATTTATTGAGATCAGATCTTTAAATAATTGGTCCTCTGGAATTAACCCTAACCCTAAATTTAATTTTCAGCCCTAGGCCGTATTTAGCCGCTCATGCGGCCCAAGGATCATCGCATGTATGGCTTCTGCGCTTCTGGCGAGTCGAGATGAAGCGCAGGAGAGCCGCTGGGCAGAACGGAAGGTGTACATGAGGAAAGGAGGAGCAGCAGCACCGGGGAAGACGACGACAAAACCCGGGTTCAATTCCCAGCCGCCACCCCGCGGTGGGCAAAACGGCGGAAATCGGCTGAGGGAAGAGCCGCCGGTGTTTATGGACGGAGCGGCGGCCTCCGATGATTCATCGAGTCTTAACAGAAAATCTATAAGCATAAACCGCGAGGCGCGAAAGGAATCTAATGCGGAGGCCTATATAACATATAATGTTTCAGCATATTCCAAAGAAGAGATCCGGGAGCTGAGAAGAAAGCTTAAGAGTCAGCTAGAGCAGGTTAGGAGTATGTACAGTAGGGTAGAGGCCAGGGAAACGCATATAAGGGGAGGCGGGGTTAATGCTAACGCTAGCTACAGCGCCTCTCAGTTCTCTGGGAACGATATGCGTAACTATGGTGCTAAAGAAGTTACTTCAGGGTTGGCTACCGGCGGTCAACGGCCGCCAGCTCTGCAGCTAAACCTCGCAGCCATTGATAGCAGCGGAGATGGCGCAGCCGCTAAAGAAAAACGAACGCCGAAGGTCAATCCGTATTATCTTAATTCAGAGTTTGTAATGGGCAAGGATAAGATGCCGCCGCCGCCACCGGATAATAAGAAAGGGGGAATGAAGAGAACTGCTCAGAGCAAGTCAGAAATTAGGGAAACAAAGAGACCTATTGCTTATCCCATGAACGGCAAGATACTGCAAGATGTCATGAAACAGTGCGGTTTTCTGCTATCCAGGCTCATCAAACACAAGCATGGCTGGGTTTTTAAAGCCCCCGTGGACACTGTAGCGCTCGGGCTGCATGATTATAACACCATTATAAAGCAGCCAATGGATCTTGGTACTGCCAAGGCGAAGCTAAATGCAAACGAGTATAAATCGCCACAGGAATTTGCAGGGGATATCAGATTGACGTTTAACAATGCTATGACCTATAACCCAAATGGACATGAAGTTCATATTATGGCTGAGCAGATGTTGCAGTTTTTTGAGGACCGGTGGAAACCGATTTGTGATAGGTATGAAGAGGAGAAGAGGAAATTGTCATGGTCAGGAAATGACGGGCTATTACCTGGAGCAAGCCAAAATATGAAGAAATTGCCTTTTGGTGAAACCCCAAAGAAGAATTTGAAGAAGACGGAGCCTCTTCTGGGTTTGTCGCCACGGCCTCCTCCTAATGCAAAGTCCAAGGCTAATCAGACTTTGCGAGCCCCTGCTCCCAAAAAACCCAAGGCAAAAGACCTTCACAAGCGGGAAATGACTTTTGAGGAGAAGCAAAAGTTGAGTGCAAGCCTACAAGGTCTGCCCACTGAGAAGTTGGAGAATATAGTCCAGATTATCAAGAAAAGAAATCCAGCGCTATGTCAGCAGGAGGATGAAATAGAGGTTGATATAGATAGTTTCGATACAGAAACGCTGTGGGAACTTGATAGGTTTGTAAATAATTGCAAGAAAAGCATGAGCAAGAATAAGAAGAAGGCAAATGGTGCTGAACAGCTACATTCAACTGGGATGGAGGACGTTGCAGCTAGAGAGAAACCCCAAAGAAACACAAGAAAGGGGAACAGGGAGAAGAGGATGTTGACATCGATGGTGATATGCCTTCTACAAATTTCCCTCCTGTGGAAATTGACATGGATGGTGGTTATGCAAGCAAGTCTAGCAGTTCTAGTAGCTCGAGCAGTGATTCAGGTTCTTCTTCAAGCGATTCTGATTCAGGGAGCTCGTCGGGAAGTGATTCAGATGCAGATGATGCACATTCCCCTGTGGCGCACTCTCCGGCCGGAGAGTCAAAGGCGCTACCTAGAAATTAAAGCAGATCCCGAAGTTCAACATTGTTTCACCAGCGGCTGTTTGGAGAGCTGTGTAATGGGATAAAACTTTATTTTCAAAAGGCGTTGCCAGCTTTAGCTGGGTGGGGGTCCTTACATACTGTACACCATTGTCTGCAGCCATTGGCAAAGCAAAAAGCACGCATGGGTGGTGACTGGCAGCCCTCACAGGTGTACCATATGGATTTACAAGTTTTCTTTGCTGTTGGTTCGACTGCAAGTGCTTTAGAATTTTAAGCAGATAAAAACATTTTGGATCCTGCATTTGCCGAGTGGGGAAAAGGTTGGTGAGAGCAGGTAAAAGGACAGGTGCTTTTGGAACCTTCCGCTTGTGGAATCTTCCACGCATGTACAATATGCAACAGACCTCGTTAGAAAGAACTTCCTATGAAACGAGGATTGTTTTTCTGTTGGGGATTTATATAATAGGAATGTATTGTAACATACCCTGGTCAATTTTTTTAACAATTTGCGTTCCAATGTAAAATGTGCTATTGCTGGTCGTTTATGTAATTCTCTGATTTATATCAGTAAATGTAAAATGTTTTCGAGATCATGTTCATAAATGCCAAGAGTGAAGGGATTTTTCGCCGATTGGTGGCCATTGAACCGTATTCATACTACTTGAAATTTTGTTTAAACAGATAAATTGTACTCGCAATTATTTGTTTCAT

Ace file of the UniGene sp_v1.1_unigene11699

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	gte4 (global transcription factor group e 4) dna binding	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	58%
Blast2go	root development	GO:0048364	Biological Process	58%
Blast2go	cell cycle	GO:0007049	Biological Process	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Bromodomain	IPR001487	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABJ0

Fln msg: your sequence is longer than subject: 652 - 377

Fln protein: MASALLASRDEAQESRWAERKVYMRKGGAAAPGKTTTKPGFNSQPPPRGGQNGGNRLREEPPVFMDGAAASDDSSSLNRKSISINREARKESNAEAYITYNVSAYSKEEIRELRRKLKSQLEQVRSMYSRVEARETHIRGGGVNANASYSASQFSGNDMRNYGAKEVTSGLATGGQRPPALQLNLAAIDSSGDGAAAKEKRTPKVNPYYLNSEFVMGKDKMPPPPPDNKKGGMKRTAQSKSEIRETKRPIAYPMNGKILQDVMKQCGFLLSRLIKHKHGWVFKAPVDTVALGLHDYNTIIKQPMDLGTAKAKLNANEYKSPQEFAGDIRLTFNNAMTYNPNGHEVHIMAEQMLQFFEDRWKPICDRYEEEKRKLSWSGNDGLLPGASQNMKKLPFGETPKKNLKKTEPLLGLSPRPPPNAKSKANQTLRAPAPKKPKAKDLHKREMTFEEKQKLSASLQGLPTEKLENIVQIIKKRNPALCQQEDEIEVDIDSFDTETLWELDRFVNNCKKSMSKNKKKANGAEQLHSTGMEDVAAREKPQRNTRKGNREKRMLTSMVICLLQISLLWKLTWMVVMQASLAVLVARAVIQVLLQAILIQGARREVIQMQMMHIPLWRTLRPESQRRYLEIKADPEVQHCFTSGCLESCVMG*

Protein Length: 653

Fln nts: ATGGGATCCAAGGGCACCCTGTGAAACCCTTGCCCCCCTTTGTCTTCTACGCCTTCGTTTCATTTCATTTCATTCATTCCCTTTCTTCCTCCTTCGCTGTTCTTGTGCTGATGATTTGGTTCGAGGAATGCGTAGGAGAGGATTTTCTTAGGAGAAGATTTTGATTTTTATGATTGATCTCTCCTGAGCTCGGATTTCCGCCGCCATAACTCAAATTTCAAAGCTCGAAGCCATAGGGTTCAGATGGTGCTCTAAATCCCCTGTCATGTCCAGATCTGTGCTGTACGGGGTTTTTAAATGGTTTGATTCGAACCATTGACCTCACGGCTTCAGCTGAAACCCTCAATCCTTTGCTCTGAAGCCGGCCGCGCAGCTGGAGAATACGAAGACACAGCTGATCTGACGGCCAGGGCGCTTCTAGGTCGTCTTCTCTTGAGATACTCTACAAAAATTGTCAGTAACCTGTTAGTAGTGATTTATTGAGATCAGATCTTTAAATAATTGGTCCTCTGGAATTAACCCTAACCCTAAATTTAATTTTCAGCCCTAGGCCGTATTTAGCCGCTCATGCGGCCCAAGGATCATCGCATGT_-_ATGGCTTCTGCGCTTCTGGCGAGTCGAGATGAAGCGCAGGAGAGCCGCTGGGCAGAACGGAAGGTGTACATGAGGAAAGGAGGAGCAGCAGCACCGGGGAAGACGACGACAAAACCCGGGTTCAATTCCCAGCCGCCACCCCGCGGTGGGCAAAACGGCGGAAATCGGCTGAGGGAAGAGCCGCCGGTGTTTATGGACGGAGCGGCGGCCTCCGATGATTCATCGAGTCTTAACAGAAAATCTATAAGCATAAACCGCGAGGCGCGAAAGGAATCTAATGCGGAGGCCTATATAACATATAATGTTTCAGCATATTCCAAAGAAGAGATCCGGGAGCTGAGAAGAAAGCTTAAGAGTCAGCTAGAGCAGGTTAGGAGTATGTACAGTAGGGTAGAGGCCAGGGAAACGCATATAAGGGGAGGCGGGGTTAATGCTAACGCTAGCTACAGCGCCTCTCAGTTCTCTGGGAACGATATGCGTAACTATGGTGCTAAAGAAGTTACTTCAGGGTTGGCTACCGGCGGTCAACGGCCGCCAGCTCTGCAGCTAAACCTCGCAGCCATTGATAGCAGCGGAGATGGCGCAGCCGCTAAAGAAAAACGAACGCCGAAGGTCAATCCGTATTATCTTAATTCAGAGTTTGTAATGGGCAAGGATAAGATGCCGCCGCCGCCACCGGATAATAAGAAAGGGGGAATGAAGAGAACTGCTCAGAGCAAGTCAGAAATTAGGGAAACAAAGAGACCTATTGCTTATCCCATGAACGGCAAGATACTGCAAGATGTCATGAAACAGTGCGGTTTTCTGCTATCCAGGCTCATCAAACACAAGCATGGCTGGGTTTTTAAAGCCCCCGTGGACACTGTAGCGCTCGGGCTGCATGATTATAACACCATTATAAAGCAGCCAATGGATCTTGGTACTGCCAAGGCGAAGCTAAATGCAAACGAGTATAAATCGCCACAGGAATTTGCAGGGGATATCAGATTGACGTTTAACAATGCTATGACCTATAACCCAAATGGACATGAAGTTCATATTATGGCTGAGCAGATGTTGCAGTTTTTTGAGGACCGGTGGAAACCGATTTGTGATAGGTATGAAGAGGAGAAGAGGAAATTGTCATGGTCAGGAAATGACGGGCTATTACCTGGAGCAAGCCAAAATATGAAGAAATTGCCTTTTGGTGAAACCCCAAAGAAGAATTTGAAGAAGACGGAGCCTCTTCTGGGTTTGTCGCCACGGCCTCCTCCTAATGCAAAGTCCAAGGCTAATCAGACTTTGCGAGCCCCTGCTCCCAAAAAACCCAAGGCAAAAGACCTTCACAAGCGGGAAATGACTTTTGAGGAGAAGCAAAAGTTGAGTGCAAGCCTACAAGGTCTGCCCACTGAGAAGTTGGAGAATATAGTCCAGATTATCAAGAAAAGAAATCCAGCGCTATGTCAGCAGGAGGATGAAATAGAGGTTGATATAGATAGTTTCGATACAGAAACGCTGTGGGAACTTGATAGGTTTGTAAATAATTGCAAGAAAAGCATGAGCAAGAATAAGAAGAAGGCAAATGGTGCTGAACAGCTACATTCAACTGGGATGGAGGACGTTGCAGCTAGAGAGAAACCCCAAAGAAACACAAGAAAGGGGAACAGGGAGAAGAGGATGTTGACATCGATGGTGATATGCCTTCTACAAATTTCCCTCCTGTGGAAATTGACATGGATGGTGGTTATGCAAGCAAGTCTAGCAGTTCTAGTAGCTCGAGCAGTGATTCAGGTTCTTCTTCAAGCGATTCTGATTCAGGGAGCTCGTCGGGAAGTGATTCAGATGCAGATGATGCACATTCCCCTGTGGCGCACTCTCCGGCCGGAGAGTCAAAGGCGCTACCTAGAAATTAAAGCAGATCCCGAAGTTCAACATTGTTTCACCAGCGGCTGTTTGGAGAGCTGTGTAATGGGATAA___AACTTTATTTTCAAAAGGCGTTGCCAGCTTTAGCTGGGTGGGGGTCCTTACATACTGTACACCATTGTCTGCAGCCATTGGCAAAGCAAAAAGCACGCATGGGTGGTGACTGGCAGCCCTCACAGGTGTACCATATGGATTTACAAGTTTTCTTTGCTGTTGGTTCGACTGCAAGTGCTTTAGAATTTTAAGCAGATAAAAACATTTTGGATCCTGCATTTGCCGAGTGGGGAAAAGGTTGGTGAGAGCAGGTAAAAGGACAGGTGCTTTTGGAACCTTCCGCTTGTGGAATCTTCCACGCATGTACAATATGCAACAGACCTCGTTAGAAAGAACTTCCTATGAAACGAGGATTGTTTTTCTGTTGGGGATTTATATAATAGGAATGTATTGTAACATACCCTGGTCAATTTTTTTAACAATTTGCGTTCCAATGTAAAATGTGCTATTGCTGGTCGTTTATGTAATTCTCTGATTTATATCAGTAAATGTAAAATGTTTTCGAGATCATGTTCATAAATGCCAAGAGTGAAGGGATTTTTCGCCGATTGGTGGCCATTGAACCGTATTCATACTACTTGAAATTTTGTTTAAACAGATAAATTGTACTCGCAATTATTTGTTTCAT

Fln Alignment:

sp_v1.1_unigene11699___KILQDVMKQCGFLLSRLIKHKHGWVFKAPVDTVALGLHDYNTIIKQPMDLGTAKAKLNANE---YKSPQEFAGDIRLTFNNAMTYNPNGHEVHIMAEQMLQFFEDRWKPICDRYEEEKRKLSWSGNDGLLPGASQNMKKLPFGETPKKNLKKTEPLLGLSPRPPPNAKSKANQTLRXXXXXXXXXXDLHKREMTFEEKQKLSASLQGLPTEKLENIVQIIKKRNPALCQQEDEIEVDIDSFDTETLWELDRFV
D5ABJ0_______________KRMAELMRQFSTILRQITQHRWAWPFMTPVDVKGLGLHDYHDVIKKPMDFGTIRRKMDAKDATGYKNVCDICEDVRLVFKNAVTYNDDQSDVHVMAKTLSQKFEEKWKTLWPKVNEEEARRKKEEADA---NSREMVDSRLSGET---DLEK----LGGELDELNEHLEKLRQELAPKC-----------RMMSVEEKRQLGESLGKLSPEDLTKALQIIAQKNPSFIPTEDEVELDIDAQDASTLWRLQYFV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
661			42	57	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
58	74	TTTCA TTTCA TTTCA TT	17
1255	1266	GCC GCC GCC GCC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain