SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11692

Length: 1129 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11692

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein AINTEGUMENTA, putative n=1 Tax=Ricinus communis RepID=B9RM33_RICCO	-	-	3.0e-12	26%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	36%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: Distance to subject end: 503 aas, your sequence is shorter than subject: 287 - 606

Fln protein: MGSTSNWLAFSLSPHLTVDMPDTTQPRSASAASNHRRHHNDFSNGTVHDCYNLHPTDTMQMPLRPDGSLCILEALDRTQNNQDWRLKSLGNLHGCMDSESDVQSQQIMKSELSILAGGGGSSEQMSASIGQHNNVEQQEGPKLEDFLGGASLGGHYNDARTDSIYRNADAFDDKMMVPGLRDVVPNCLNAFDVTDSELSSGSKKTDQNQDPAARNMNPIQNTLVQDSYDENSNDQYMFQDCSLQLPQNSGANNMIGLSMIKTWLRSQPCPENKMNAAPNSTTPTSAK

Protein Length: 288

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCAATTCGTGTAGAATAAGGGTGCACGGTCTTTTCCCTCTATTCTGCTCATGATTCCACTGTGTATCGTATTGTTAGGATTTTGCAAGGAAGCGCCCTTCGTTTCCGGTCCCTTCAGAGCTCTCCTTCCGATTCTGGCGCCTACTCACTGCAAATTCAAGACCCCTCTCTTCAGTCAGTCTAGGAAATAGGTGCAATCACGAGATTTAGGAATTTTGAAAGAAA_-_ATGGGGTCGACGAGCAATTGGCTTGCATTTTCTCTGTCGCCTCATCTGACTGTGGATATGCCAGACACGACACAGCCACGGTCGGCCTCTGCTGCTTCTAATCATCGTCGTCATCATAATGATTTCAGCAATGGAACTGTTCATGATTGTTATAACCTTCATCCCACAGACACTATGCAGATGCCTTTGAGGCCTGATGGCTCGCTTTGTATACTGGAGGCACTCGACCGCACGCAGAATAATCAAGATTGGCGACTGAAAAGTCTGGGAAACCTTCATGGATGCATGGATTCGGAATCAGATGTGCAATCACAGCAGATTATGAAGTCGGAGCTGTCGATACTAGCCGGGGGTGGGGGTAGCAGTGAGCAGATGTCTGCATCCATTGGGCAGCACAACAACGTGGAGCAGCAAGAAGGGCCAAAGCTGGAGGATTTTCTTGGTGGCGCTTCTCTGGGAGGACACTATAACGACGCGAGAACGGATTCAATCTACAGAAACGCGGACGCCTTCGATGACAAGATGATGGTGCCAGGGTTGCGGGATGTTGTGCCAAATTGCTTGAACGCTTTCGATGTCACCGACTCGGAATTATCGTCGGGCTCCAAGAAAACTGATCAGAACCAGGATCCTGCAGCGAGGAATATGAACCCAATCCAGAACACCCTCGTACAGGATTCATATGATGAAAACTCGAACGATCAATATATGTTCCAGGATTGCAGCCTCCAGCTTCCTCAGAATTCCGGGGCAAACAACATGATTGGTTTGTCGATGATCAAGACATGGCTGAGGAGCCAACCATGCCCAGAAAACAAGATGAATGCGGCTCCCAATTCAACTACCCCGACCTCAGCTAAAG

Fln Alignment:

sp_v1.1_unigene11692___DVTDSELSSGSKKTDQNQDPAARNMNPIQNTLVQDSYDENSNDQYMFQDCSLQLPQNSGANNMIGLSMIKTWLRSQPCPENKMNAAPNST
Q76H96_______________DSQSYEAQPRSLQMQQEHHDLCEFVQESQQMPFQVQLDPNSNDT-MFADCSLQLPPGSG---MVGLSALKTWLRQNPSNADHHKVVPSGS

SNPs (tot: 103)

Position	A %	C %	G %	T %	Probability
24	33		66		0.997452
26		66		33	0.997452
30	66			33	0.997452
35		33	66		0.997452
36		33	66		0.997452
41			33	66	0.997452
43	66			33	0.997452
46		66	33		0.997452
47	66	33			0.997452
62	75	25			0.996473
64		25	75		0.996473
69	80		20		0.995493
70		80		20	0.995493
71		40	60		1.0
72			80	20	0.995493
75	20	60	20		0.99255
76		40		60	1.0
77		20		80	0.995493
78			20	80	0.995493
80		80	20		0.995493
81	20	60	20		0.99255
84		80	20		0.995493
85	20			80	0.995493
86	85	14			0.993533
87		14	14	71	0.984337
90	14			85	0.993533
92	14	85			0.993533
93		14		85	0.993533
95	85			14	0.993533
98	85	14			0.993533
100			14	85	0.993533
101		85		14	0.993533
108		14	85		0.993533
109	14			85	0.993533
121	77	22			0.999999
123			77	22	0.999999
124	77	22			0.999999
125			22	77	0.999999
127			22	77	0.999999
128	22			77	0.999999
129		22	77		0.999999
131	77			22	0.999999
132	77			22	0.999999
135	77	22			0.999999
136	77			22	0.999999
139			77	22	0.999999
141	22	77			0.999999
144		22		77	0.999999
145	22	77			0.999999
171			10	90	0.90298
174		90		10	0.90298
177		10		90	0.90298
178		10		90	0.90298
179		90		10	0.90298
185		90		10	0.90298
195			90	10	0.90298
196		90		10	0.90298
197	90			10	0.90298
198	90			10	0.90298
199	90		10		0.90298
204	90			10	0.90298
205			90	10	0.90298
206	90			10	0.90298
207		90		10	0.90298
208		90		10	0.90298
209		90	10		0.90298
212	10	90			0.90298
215		10		90	0.90298
217		90	10		0.90298
221		90	10		0.90298
222	90		10		0.90298
683	40	60			1.0
685	40			60	1.0
686	40	60			1.0
688			20	60	0.99255
690	40	40	20		1.0
692	20	80			0.995493
693	40			60	1.0
694	40			60	1.0
695	20		80		0.995493
696		20	80		0.995493
697		80		20	0.995493
698			20	80	0.995493
700	40			40	1.0
701		40	60		1.0
702	80		20		0.995493
703	20	60	20		0.99255
704			20	80	0.995493
705	20	60			0.99255
706	60			20	0.99255
737		12		87	0.992554
738	87		12		0.992554
740	87	12			0.992554
741	87		12		0.992554
742		87		12	0.992554
748			87	12	0.992554
749	87			12	0.992554
751	87		12		0.992554
752	87	12			0.992554
753		87		12	0.992554
755		12	87		0.992554
757		12		87	0.992554
859			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain