SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11687

Length: 1516 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11687

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transporter, putative n=1 Tax=Ricinus communis RepID=B9R7T6_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	78%
Blast2go	transporter activity	GO:0005215	Molecular Function	78%
Blast2go	intracellular	GO:0005622	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	CRAL-TRIO domain	IPR001251	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZA7

Fln msg: Overlapping hits, possible frame ERROR between 600 and 596,

Fln protein: MLRRWYGNKDHHVQDHDERLAKINELRAAIGPLSGHALKFCSDACLRRYLEARNWNVHKSxxxMLEETLRWRATYQPEEIHWDEVAMEGETGKVYRADFHDRFRRSVLILNPAKQNTTSEENQLRHLVYLLENAIINLPPDQEQMVWLIDFNGWSLTNYVPVKTVRETTNILQNHYPERLAAAILYNPPRIFEAFWKIVKYFLDSKTFEKVKFVYPKNEECSSFMQQVFDFDKLPTAFGGNNESEYDNEEFSKLMRQDDIKTAQYWMSDDKSSEMNGNLASKSDLKVDADL*

Protein Length: 293

Fln nts: ATGGGGATTGTACAAGTCGTGGAGAGTGAAGATCTTTTGTTGGGTGGAGATAAAAGTAAATGGTTAACAATTCACCATGGATTACCGGCGTTGAAAATTTAGGATGATTGATATTTGGGTTGCAAGTGTGAATCATCCTGAGGTGGTTGACGGACATTGACTTCTGCGTCTTTGAATAAATTTTGGGTTTCTGAGAAAAAGGTGCACCCACAAAGACATGTGGAAAACTTTTTGATTAGCAGCTTCTGAGAAAGCAACACACTAAGAGGGTAATGCTTTCTTGATTGTATGAATGCATATTAGGAGGAGGACACAGCCAGGGAGGTGGAGAAACCTTCTGGACTTGCCTTGAGCATCTAGATTGTGCAGAAATCCAGGTTGAATTAACTTCTGCACTTTGTGAAACTTACCACC_-_ATGTTGCGGAGATGGTATGGTAACAAGGATCATCATGTACAAGATCATGATGAAAGGCTTGCTAAGATAAACGAACTGAGGGCTGCCATTGGTCCTTTGTCTGGCCATGCTTTGAAGTTTTGTTCTGATGCATGCTTAAGACGATATTTGGAAGCTCGGAATTGGAATGTTCATAAATCAxxxxxxxxxATGTTAGAAGAGACACTTAGATGGAGGGCAACATATCAACCAGAGGAGATTCACTGGGATGAAGTTGCTATGGAAGGTGAAACTGGGAAGGTGTATAGGGCAGATTTTCATGATCGATTTCGGAGATCCGTCCTTATATTGAATCCTGCAAAACAGAACACTACATCGGAAGAGAATCAACTACGCCACCTTGTTTATCTCCTAGAGAATGCCATTATTAATTTGCCTCCTGATCAGGAGCAGATGGTTTGGCTCATAGACTTCAATGGCTGGTCATTGACCAATTATGTGCCTGTAAAAACAGTTCGTGAAACTACAAATATTTTACAAAATCACTATCCCGAGAGACTTGCTGCAGCTATTCTATACAACCCTCCACGGATCTTTGAAGCTTTTTGGAAGATTGTGAAGTACTTTCTTGATTCAAAGACGTTTGAGAAGGTGAAATTTGTCTACCCCAAAAATGAAGAATGTAGCAGTTTCATGCAACAAGTTTTTGATTTTGATAAGCTTCCGACAGCATTTGGAGGAAATAATGAATCCGAATATGACAATGAAGAGTTCTCCAAACTTATGCGACAAGATGATATAAAGACTGCTCAGTATTGGATGTCAGATGACAAGTCAAGTGAGATGAATGGTAATCTAGCTTCAAAATCAGACTTGAAAGTTGATGCTGATCTCTAA___TAAATAGTATAAGCAGTCAGCTAGTAAGTTGCATTTAGAAAAAAATAAATTCAAGGTCAAATTTCGACTTGATGATTAAATTGGCAAAATTGGATAGCTGGGATTTCTTATTCCAGCTAGCATCTTTTGGTGACAGGTCTGCAGTGATGCATTTTAATACGTCCTGTATCTTGATGGATGTAAGAGGACATGTATTTAGAATAATGAAATGATAAATCTTTTGATGCC

Fln Alignment:

sp_v1.1_unigene11687___MLRRWYGNKDHHVQDHDERLAKINELRAAIGPLSGHALKFCSDACLRRYLEARNWNVHKSxxMLEETLRWRATYQPEEIHWDEVAMEGETGKVYRADFHDRFRRSVLILNPAKQNTTSEENQLRHLVYLLENAIINLPPDQEQMVWLIDFNGWSLTNYVPVKTVRETTNILQNHYPERLAAAILYNPPRIFEAFWKIVKYFLDSKTFEKVKFVYPKNEECSSFMQQVFDFDKLPTAFGGNNESEYDNEEFSKLMRQDDIKTAQYWMSDDKSSEMNGNLASKSDLKVDAD
A9NZA7_______________MLRRWYGSKDHHVQDHDERQAKINELRATIGPLSGHALKFCSDACLSRYLEARNWNVHKSxxMLEDTLRWRATYQPEEIRWDEVAMEGETGKVYRADFHDRFRRSVLILNPAKQNTTSEDNQLRHLVYLLENAIINLPPEQEQMVWLIDFNGWSLSNYVPVTTVREATNILQNHYPERLAAALLYNPPRIFEAFWKIVKYFLDSKTFAKVKFVYPKNEECTSFMQQVFDFDKLPTAFGGNNESEYDNEEFSKLMRQDDIKTAQYWMSDEKSSEMNGNLASKSDLKVDAD

SNPs (tot: 8)

Position	A %	G %	T %	Probability
290	11	88		0.923564
292	81	18		0.999994
293		18	81	0.999994
295	81	18		0.999994
630	75	25		0.996473
649	75	25		0.996473
770	68		31	1.0
1412	14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain