SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11663

Length: 1078 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene11663 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	22%
Blast2go	cyclic nucleotide-gated ion	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	70%
Blast2go	potassium ion transport	GO:0006813	Biological Process	70%
Blast2go	calcium ion transport	GO:0006816	Biological Process	70%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	70%
Blast2go	cyclic nucleotide binding	GO:0030551	Molecular Function	70%
Blast2go	transferase activity	GO:0016740	Molecular Function	70%
Blast2go	inward rectifier potassium channel activity	GO:0005242	Molecular Function	70%
Blast2go	intracellular cyclic nucleotide activated cation channel activity	GO:0005221	Molecular Function	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ion transport	IPR005821	-	0.0	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL78

Fln msg: Distance to subject end: 29 aas, your sequence is longer than subject: 304 - 265

Fln protein: MSFRDTGIKVQVMDGEREKFVRFESDLGSQQSLESDRKGLGKYSFSLESFERTPSSISSSVRRGFERSSEGLKNIGRSLRFGVSKEVFTEDLKSSEKVVFNPQDKFFQRWNKIFVLTCLAAISVDPLFFYLPVIDKKSECLDIDHNLAITATVLRTITDIFYLIHMGLQFRTAFIAPSSRIFGRGELVIDPAQIAKRYLSTYFIVDFLAVLPLPQVVIWIIMPHMRGEAALNIKNTLRFIVLFQYLPRFFRIFPLCAQVIGTTGLLIETAWAGAAFNLLLYMLASHVLGSCWYLLALERHDTCR

Protein Length: 305

Fln nts: CCGATTGCACGGTTCCTGTTCCCGTCTGCAATCGACGAAGCAGCCGCGATCTCCGTTGGACTCCAGATACTACTTCATCTTCATAAATTTACATATGAGAGCCTTTGGACAAGTTAAGCAATTATCCATTAGCAGATTCAAGGTTGATTGAACTTGTGCATCAAC_-_ATGTCTTTCCGTGATACTGGTATAAAGGTTCAGGTTATGGATGGTGAAAGAGAGAAATTTGTGAGGTTTGAAAGTGATTTAGGATCTCAGCAATCTCTGGAATCAGATAGGAAGGGACTGGGTAAATATAGTTTCAGTTTGGAAAGTTTTGAACGAACACCAAGCTCTATATCTTCTTCTGTGAGAAGAGGGTTTGAAAGGAGCTCAGAAGGATTGAAGAATATTGGTCGGTCATTGCGTTTTGGAGTTTCAAAAGAAGTATTTACTGAGGACCTCAAGTCCTCTGAAAAAGTAGTATTTAACCCTCAAGATAAGTTCTTCCAGAGATGGAATAAAATCTTTGTTCTAACATGCCTTGCAGCAATATCAGTGGATCCCTTATTCTTTTATCTTCCAGTCATTGATAAGAAATCAGAATGCCTTGATATAGATCACAACTTAGCAATCACTGCTACTGTGCTTCGGACAATCACTGATATTTTCTACTTAATACACATGGGCCTTCAGTTTCGTACTGCCTTCATTGCTCCATCATCTAGAATCTTTGGGAGAGGGGAGCTTGTCATTGATCCTGCACAAATAGCAAAGCGCTACTTGTCAACATACTTCATAGTAGACTTTCTCGCTGTTCTGCCTCTTCCACAGGTGGTTATTTGGATTATTATGCCACACATGAGAGGCGAAGCTGCATTGAACATCAAAAATACCTTGCGGTTTATTGTCTTGTTTCAGTACTTGCCCAGATTCTTTCGCATATTCCCACTTTGCGCACAAGTTATTGGAACAACTGGTCTATTGATTGAAACTGCATGGGCAGGCGCTGCTTTCAACTTACTTCTTTATATGCTTGCAAGCCATGTTCTTGGAtCTTGTTGGTATTTACTTGCATTGGAACGGCATGACACATGTCGGC

Fln Alignment:

sp_v1.1_unigene11663___KVVFNPQDKFFQRWNKIFVLTCLAAISVDPLFFYLPVIDKKSECLDIDHNLAITATVLRTITDIFYLIHMGLQFRTAFIAPSSRIFGRGELVIDPAQIAKRYLSTYFIVDFLAVLPLPQVVIWIIMPHMRGEAALNIKNTLRFIVLFQYLPRFFRIFPLCAQVIGTTGLLIETAWAGAAFNLLLYMLASHVLGSCWYLLA
B8LL78_______________KYIISPYDTIYRCWNTFLIILVVYCAWINP--FELGFIDEPKPG---------ALFIADIVIDIFFAIDIVVTFFVAYVDDKTQ-----QIEDNPKRIAVRYISTWFIFDITSTVPF-QPFSYIFTGKFGSGLSYNLLNLLRLWRLRRVKSLFTRL---------EKDIRFSYFWVRCARLICVTLFAVHCAGCMYYLLA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
383		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain