SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11619

Length: 1076 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11619

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polygalacturonase n=1 Tax=Citrus sinensis RepID=A2IB56_CITSI	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	polygalacturonase	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	0.0	70%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	70%
Blast2go	Starch and sucrose metabolism	00500	70%
Blast2go	Metabolic pathways	01100	70%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	70%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	70%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	70%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 28	IPR000743	-	70%
Blast2go	Pectin lyase fold/virulence factor	IPR011050	-	70%
Blast2go	Pectin lyase fold	IPR012334	-	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQX9

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 247 - 493

Fln protein: MEMEKSSQLSTLLLLLTIVCGQCKKTHIEGNPFSICEHSNNQGRLWPLSGETENCSPLASTIDLARQFSIEDSSNFEMSDWLPRSSNVVCVDEFGAKGDGENDDTKAFKNAWRKACSSARAVFIVPHGKRYLVKPIKFSGPCKSALTMQVSGTIIAPADPRVWDGLNRRQWLRFKEVDDLTVEGGGTFYGSGDQWWAESCKIKKTNPCRSAPTAITFELCNNLRMMNLTVENSQQMHIKLRKCVGVV

Protein Length: 248

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTATTCATAACTTCATGGCTGTCGAGACTTTACTCGTGCTACTCATTGTTCCTTATCATAACTTTATGCCTGTCATTCTTCTTGATTGTAACTTTATGCCTGTCGAGATTTTGTAGGATCCGGTTCCATACATTCCATCCTTTGCTTTATCAAGGAGTTATTGTGCCTTTACATGCCATAGAAGCCCTATAGCTCCACAGTTTCTTGCGCTTGATATATTTGATGCCATTAAAGGCACACAGAACCTGTGGCGCCACAGTTTCTCCTGTTTTTGGTTCATCTGTCATGGTAATCTGTGTGCTATAATGA_-_ATGGAAATGGAGAAGAGTAGTCAGTTAAGTACATTGCTGTTGTTGTTGACAATTGTATGTGGGCAATGCAAGAAAACCCACATTGAAGGCAACCCATTTTCAATATGTGAGCACAGTAATAATCAGGGACGACTGTGGCCATTATCAGGCGAAACAGAAAATTGTTCCCCATTAGCTTCAACCATTGATTTGGCACGCCAGTTCAGCATTGAAGACAGTTCTAATTTTGAAATGAGCGATTGGCTGCCCAGATCCAGTAATGTAGTGTGTGTAGATGAGTTTGGTGCTAAAGGAGATGGGGAGAATGATGACACCAAGGCATTTAAGAATGCATGGAGAAAGGCTTGTTCATCGGCTCGTGCAGTTTTCATTGTACCCCATGGAAAGAGGTATCTTGTGAAGCCCATCAAATTCTCTGGTCCCTGCAAATCTGCGTTGACTATGCAGGTGTCTGGAACAATCATTGCCCCTGCAGACCCCAGGGTTTGGGATGGATTAAACAGAAGGCAGTGGCTTCGTTTTAAGGAAGTAGATGACCTGACAGTAGAGGGGGGAGGGACATTTTATGGTAGTGGAGATCAATGGTGGGCAGAATCTTGCAAAATCAAGAAAACAAATCCATGTCGATCAGCTCCAACTGCAATCACATTCGAATTATGCAACAATCTAAGAATGATGAACCTGACTGTAGAGAATAGTCAACAAATGCATATAAAACTCAGAAAATGTGTTGGGGTAGTA

Fln Alignment:

sp_v1.1_unigene11619___MEMEKXXXXXXXXXXXXIVCGQCKKTHIEGNPFSICEHSNNQGRLWPLSGETENCSPLASTIDLARQFSIEDSSNFEMSDWLPRSSNVVCVDEFGAKGDGENDDTKAFKNAWRKACSSARAVFIVPHGKRYLVKPIKFSGPCKSALTMQVSGTIIAPADPRVWDGLNRRQWLRFKEVDDLTVEGGGTFYGSGDQWWAESCKIKKTNPCRSAPTAITFELCNNLRMMNLTVENSQQMHIKLRKCVGV
B8LQX9_______________MRMEKSSLLSALLLLLAILSGQCKKTHIEGDPFSICVHRNHQGRVSPSSVETENCTPLAQTIDLAGQFNNEDNSNSEMNNWVPRSSNVVCVDEFGAKGDGENDDTKAFNNAWSKACSSAPAVFLVPHGKKYLVKPIKFSGPCKSALTMQVSGTIIAPADPRVWDGLNRRQWLRFKEVDDLTVEGGGIFYGSGEQWWAESCKINKTNPCRPAPTAITFELCNNLRVMNLIVQNSQQMHIKFRKCVGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain