SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11614

Length: 2294 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11614
CGTCGTGACCTTGGCTGTCACTCATAATTTTAAAATGAAAACGAACTATCTCCTNACCATGCATACATTTAGGAGAGCGATCCTCTTCAATGGTTCACAGGCCACATCCTTCCCACTTACACTCTATACAATGCAGAATTTATCATGCCCATCTCATCTGATCTGCAGTTTTCTCTGCGCGACATAAATCTAGATAGATAGATCAACAGATATAATGGGGCCGAGGCTGCTGCCATGGCTGTCAATACTTTTGCCACTGTTGCTGGTGTCTGCAGCAAGTCTAAAACCAGCTTCTAAACAAAGACCAGCTCCAGCTCCAGCTCCAGTTCCTATTTCCAGAAATATTGATTCAAAAGCATATGCACCTGGTCCGAAACCCACTTCAGGAAATGCACATGCTCTTTCTCCTTCACCTCTTGGAATCACTTCCGCAGATATTGATTCAGAAGCATATGCACCTGCTCCGAGAGCCACCTCAGGAGATGCACTTGCTCCTTCCCCATCACCTCTTGGAATCACTTCACCTACAAGTGAGAACTCCTCAGCACCTGAACCAGAAGCTGAAGACACTGATCCAACTACAGAGCTACCGGAAGAAACTGATCCAAGTACAGAGCTACCTGAAGAAACTGAGCCTAAGACTGTGAAATGGTGTGCAGTACGGGATGAGTTTGTGAACTGCCAATACTATATAAGTCTTTTGAGTCCAGTGGATGATTACCGCTGGAAGTGTGTAAAGAAGAAGACAGCTTTAGACTGTATGGAAGCAATAAAAAATAAGGAAGCAGACCTGATCTCCCTTGATTCAGGCTTCGGATACATTGCTTTTAAGAACTATTCCATGAAGGCTATAATGGCCGAAGAGTACTGCAACCATGCTGATTCATATGATGCTGTCGCTGTTGTGAACAAGAGAATGTGTAACAAGAAAAGTGACTTGAGCTTGAACAATTTCCGGGGCATGAAGTCTTGCCATGCAGGCTATATGACAGCAGCTGGATGGAACTATCCAGTGCACTACCTTGTAAATTCTGTTTTACGGCAGCAGCCCGGAAAGAGTCTTTCTGTGAGAAATGATGAAACTATAATATCAAATTTTTTTCTCTGCATCTTGTGCACCCTCAGAAGTAGAAGGAAAGGGGTGGTGTAGTGCTTGTGGTAATAGCAGCTCATGCCTTCCAGACAATATATACTCCGGGTATTCGGGAGCTTTTCGCTGTCTCGTTGAAGGAATTGGAGATATTGCTTTCTTAAAAGCTGATACTGCCCTATTGTATTCTCTCGAAGGCCTGAATAATCAATCATGGTCAACAAAGTCCATCAGTGATTTCATGTACCTCTGCCCACAAGGCGGTTGCAGGCCCATCAACAACTATCCTGGAGATTGCAAATTTGGTTCTGTGCCAGCAAATACAATAATGACCCGGAACTCCCTCCCACATTCTAAGAAGCTGGCTATAGTGCAGACACTGCTGAATGCAAGCTGGACGGATGCCCTGTATAGTGGGAAGAACTGGGCTGATCATCTGCTTACTGTTGGCACACAAAGTTTGCAAGAGGTCAAGCAATTAACAAGATCTTACCTGGGATTTTCAGCTCGTGTTTCTCAGAGTATAGAAGACCTCAATACTAAAAAGGTCGAAATTGAAGATTTTACAAAAAGTCTTCCTCAAGTTGCTTCCTCTTCATCAAAACGAAGTCAACTTATATGGACCCTTTCTGGTCTTTTATCATTATATATGCTGTTATGATCAATGTGGTTCCTCAGGATGTGAGTCGTTTTTATATGCTTCCATCGCATAACATGGACCCTGGCAGGGTGCATTGCATGGTAAACAGGGGACCGGAATGCTCATTGCTTTAATCAACACAATTTAAGTTGCCTTATCTTTGCCTTTATATGGCTTTGTTTTACTAAGAAGTTCAAACTGAGATGGATCTCCTGGCCAGGCTAAACAGGCATTTAAACAAGAACAAGGATCAGTTTCCTTTCATAAGCATAGGCCATATTGGGAGCTTTTGCTAGAATAGACGGTCAGGCCTAAAGAAACTGTACTGCATCCATGGAATAAAGCTGCCTTCTTGGTGACCAGTGGCTTCTTTAAAGTTTTAAGTATAACAAATTTTTATTACCTTCACTTAGGATATGGCTGCCACTGCTCACTAAGAAAGGACAGTTCATTCATTTCTCTTGTAACTTTAGAACAAATTGTTTTCACGGCAATTATTTTGCAGATATTAAGATAGTTGTGTTTCTAATACGATTTCATAATAGAAATTATGTTACTATGTTT

Ace file of the UniGene sp_v1.1_unigene11614

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transferrin, putative n=1 Tax=Ricinus communis RepID=B9T880_RICCO	-	-	58%
FL-Next	tr=Transferrin, putative; Ricinus communis (Castor bean).	-	-	58%
Blast2go	transferrin	-	-	52%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	52%
Blast2go	ion transport	GO:0006811	Biological Process	52%
Blast2go	signal transduction	GO:0007165	Biological Process	52%
Blast2go	metal ion binding	GO:0046872	Molecular Function	52%
Blast2go	plasma membrane part	GO:0044459	Cellular Component	52%
Blast2go	basal part of cell	GO:0045178	Cellular Component	52%
Blast2go	endosome	GO:0005768	Cellular Component	52%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S60, transferrin lactoferrin	IPR001156	-	0.0	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9T880

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 186 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 221 - 597

Fln protein: YQIFFSASCAPSEVEGKGWCSACGNSSSCLPDNIYSGYSGAFRCLVEGIGDIAFLKADTALLYSLEGLNNQSWSTKSISDFMYLCPQGGCRPINNYPGDCKFGSVPANTIMTRNSLPHSKKLAIVQTLLNASWTDALYSGKNWADHLLTVGTQSLQEVKQLTRSYLGFSARVSQSIEDLNTKKVEIEDFTKSLPQVASSSSKRSQLIWTLSGLLSLYMLL*

Protein Length: 222

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAATTTTAAAATGAAAACGAACTATCTCCTaACCATGCATACATTTAGGAGAGCGATCCTCTTCAATGGTTCACAGGCCACATCCTTCCCACTTACACTCTATACAATGCAGAATTTATCATGCCCATCTCATCTGATCTGCAGTTTTCTCTGCGCGACATAAATCTAGATAGATAGATCAACAGATATAATGGGGCCGAGGCTGCTGCCATGGCTGTCAATACTTTTGCCACTGTTGCTGGTGTCTGCAGCAAGTCTAAAACCAGCTTCTAAACAAAGACCAGCTCCAGCTCCAGCTCCAGTTCCTATTTCCAGAAATATTGATTCAAAAGCATATGCACCTGGTCCGAAACCCACTTCAGGAAATGCACATGCTCTTTCTCCTTCACCTCTTGGAATCACTTCCGCAGATATTGATTCAGAAGCATATGCACCTGCTCCGAGAGCCACCTCAGGAGATGCACTTGCTCCTTCCCCATCACCTCTTGGAATCACTTCACCTACAAGTGAGAACTCCTCAGCACCTGAACCAGAAGCTGAAGACACTGATCCAACTACAGAGCTACCGGAAGAAACTGATCCAAGTACAGAGCTACCTGAAGAAACTGAGCCTAAGACTGTGAAATGGTGTGCAGTACGGGATGAGTTTGTGAACTGCCAATACTATATAAGTCTTTTGAGTCCAGTGGATGATTACCGCTGGAAGTGTGTAAAGAAGAAGACAGCTTTAGACTGTATGGAAGCAATAAAAAATAAGGAAGCAGACCTGATCTCCCTTGATTCAGGCTTCGGATACATTGCTTTTAAGAACTATTCCATGAAGGCTATAATGGCCGAAGAGTACTGCAACCATGCTGATTCATATGATGCTGTCGCTGTTGTGAACAAGAGAATGTGTAACAAGAAAAGTGACTTGAGCTTGAACAATTTCCGGGGCATGAAGTCTTGCCATGCAGGCTATATGACAGCAGCTGGATGGAACTATCCAGTGCACTACCTTGTAAATTCTGTTTTACGGCAGCAGCCCGGAAAGAGTCTTTCTGTGAGAAATGATGAAACTATAATATCAAATTTTTTTCTCTGCATCTTGTGCACCCTCAGAAGTAGAAGGAAAGGGGTGGTGTAGTGCTTGTGGTAATAGCAGCTCATGCCTTCCAGACAATATATACTCCGGGTATTCGGGAGCTTTTCGCTGTCTCGTTGAAGGAATTGGAGATATTGCTTTCTTAAAAGCTGATACTGCCCTATTGTATTCTCTCGAAGGCCTGAATAATCAATCATGGTCAACAAAGTCCATCAGTGATTTCATGTACCTCTGCCCACAAGGCGGTTGCAGGCCCATCAACAACTATCCTGGAGATTGCAAATTTGGTTCTGTGCCAGCAAATACAATAATGACCCGGAACTCCCTCCCACATTCTAAGAAGCTGGCTATAGTGCAGACACTGCTGAATGCAAGCTGGACGGATGCCCTGTATAGTGGGAAGAACTGGGCTGATCATCTGCTTACTGTTGGCACACAAAGTTTGCAAGAGGTCAAGCAATTAACAAGATCTTACCTGGGATTTTCAGCTCGTGTTTCTCAGAGTATAGAAGACCTCAATACTAAAAAGGTCGAAATTGAAGATTTTACAAAAAGTCTTCCTCAAGTTGCTTCCTCTTCATCAAAACGAAGTCAACTTATATGGACCCTTTCTGGTCTTTTATCATTATATATGCTGTTATGATCAATGTGGTTCCTCAGGATGTGAGTCGTTTTTATATGCTTCCATCGCATAACATGGACCCTGGCAGGGTGCATTGCATGGTAAACAGGGGACCGGAATGCTCATTGCTTTAATCAACACAATTTAAGTTGCCTTATCTTTGCCTTTATATGGCTTTGTTTTACTAAGAAGTTCAAACTGAGATGGATCTCCTGGCCAGGCTAAACAGGCATTTAAACAAGAACAAGGATCAGTTTCCTTTCATAAGCATAGGCCATATTGGGAGCTTTTGCTAGAATAGACGGTCAGGCCTAAAGAAACTGTACTGCATCCATGGAATAAAGCTGCCTTCTTGGTGACCAGTGGCTTCTTTAAAGTTTTAAGTATAACAAATTTTTATTACCTTCACTTAGGATATGGCTGCCACTGCTCACTAAGAAAGGACAGTTCATTCATTTCTCTTGTAACTTTAGAACAAATTGTTTTCACGGCAATTATTTTGCAGATATTAAGATAGTTGTGTTTCTAATACGATTTCATAATAGAAATTATGTTACTATGTTT

Fln Alignment:

sp_v1.1_unigene11614___FFSASCAPSEVEGKGWCSACGNSSSCLP---DNIYSGYSGAFRCLVEGIGDIAFLKADTALLYSLEGLNNQSWSTKSISDFMYLCPQGGCRPINNYPGDCKFGSVPANTIMTRNSLPHSKKLAIVQTLLNASWTDALYSGKNWADHLLTVGTQSLQEVKQLTR
B9T880_______________FFSKVCAPSQFEGEGVCSGCEKENGTCALGSNNLYFGHSGAFRCLVEELGDLAFVRGDTALLYSMEGPYNQSWSKKSVRDFMYLCPKGGCREINGYPGSCSFGAVPANVIMASNSIRNKKKLLILQRLTNDTWRDALHAGKRGSSHLLSPSMQQLAAVKKLTR

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
741	83			16	0.994512
742	83			16	0.994512
744		20	80		0.995493
745	80	20			0.995493
746	40		40	20	1.0
747			80	20	0.995493
748	80			20	0.995493
881	80		20		0.995493
883		20	80		0.995493
884		80	20		0.995493
888		20		80	0.995493
904	20		80		0.995493
1382		90	10		0.90298
1383		90	10		0.90298
1384			10	90	0.90298
1390		10		90	0.90298
1396	90		10		0.90298
1598			30	70	1.0
1624	90			10	0.90298
1626	90		10		0.90298
1627		90	10		0.90298
1831			12	87	0.992554
1849		88		11	0.923564
1850		88	11		0.923564
1913		11		88	0.923564
1916		11		88	0.923564
1917			11	88	0.923564
1921		12		87	0.992554
1922	87			12	0.992554
1923	87		12		0.992554
1925	87	12			0.992554
1926	87			12	0.992554
1936		12	87		0.992554
1973	50			50	1.0
2038		62		37	1.0
2080		87		12	0.992554
2280			80	20	0.995493
2299		33		66	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
191	203	TAGA TAGA TAGA T	13
305	326	CCAGCT CCAGCT CCAGCT CCAG	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain