SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11610

Length: 3666 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11610
CGTCGTGCTTGCTGTATTCCAGGGCTTCGGCTCTTTCATACCAGAGGTGTTCGTTGTTTGTCCATCTTTTGCTGCAAGGGTTGCGGATGAATGTGAGCGATTGTTGTTGCGTTCGGCCATGTGATGAGCGTGTTCCGGTTGTTGATCTGCGGTGAATAATCTTCAAATCGAGGTCTAGATCGCTTTAGTCCGTGTAGTTTTGGGTCGGATTTGGTTTGATTCCGGGTTACAGCGGGTGTGGATTTATACGTTGCAAGGGGTTTCGTTCTGATTGGCGCAGTAAGCAGGGTTTTGTTTGGGAATTGCACTGGGTGTGAGGTATATGATCAAGTTGCTGCAAAGAGCGAAATAATCGTAGGATTTTATGTTTGGGTTGGTGCGAAGCTGCGTGTAAAGCGCGTAAAGTTGCGGTATTTAAGTAAATCGCGGTTGGGAGTACTTGGAAGAGACTTGAATAGAGTTCAATCTCGCGGGAAGCGTATAAATTCGGGGTATTTGGTATGTTATAAAAGGCAGACGTCTCTTTGCTCAATTTATATACATTATTCTTCTGAAACTTACGGAGGAAGCTGCTTCAGTTGTGTGTATTTGCTCTTAGGGCCTTTCTTGGAGGACTCGCTCAAGAGTTTCAGAGTTCAATTCTTGTTTAGACGCAAGAAACACAAAAAGTTTACTGCTGAATTGGACCAGCGATTTTTACACTGCTTTCGATCGAATCGAACCAGAGAGCGATCTTTATATTATTTTAATGGTCTTCTTCAGTTGAATATTTTCGAAATATCTCTACAGCATTTTTGACTGCCAAAAAGGATAGAACCGGCTGTCTTTACAGCATTTTCCACCGTTAAGAGGAATCGAGCCGGCAATAAACACAGCATTTCTCTGATTAGGGCTTAGTCCTACCAAGTTCCAAGTATGGTAAGCGCGTGGGCTGATTCAGGGCCGGTCTTGGCCGCAGAGAAGGTGTCGGTGAACGGAAACCCTGCTCCTCCCGCGCCCCGACCCTCCCGCGAGTCGTATGTTCCGCCGCATATGCGCAACCGCGAATCGCAGTTGTCCAATGCTTCTGTGCCGCCCCCTCCGGTGCCTTCTGCACCTGCCAATCCGTCTTCCGGTTGGAACAGGGACGTTGGGGTTTCTCGGCCTCTCTCAAGGACGGGATCTTGGGCAGCCGAGAGTGAAAAATCTGAAAAGTCTCTAGGCTGGGATGAGAAGCCCGTCTGGGGCGAAAAACCCTCATGGGGTGCATCGGGAGGACGCGGGTGGGGTAATACTACCTCCAATGCTCGTTCTAGTGGCTCTCGAGACCGCGAAGTAAACCCCTTCGCTAAAGACTTGAAAGCCGACGATGTCTTTGACCAGGTGAATACGGGTATAAACTTCGATGCATACGAAGACATTCCTGTGGAGACAAGCGGAGTCCATGTACCTCCTCCTGTCAATACTTTTGCTGAAATTGATTTGGGAGAGGCCCTAAATCTGAATATCAAGAGGTGTAAGTTTGCTAAGCCGACTCCCGTGCAGAAATATGCGATACCTATTTCGTTAGCTGGCCGAGATTTAATGGCGTGCGCCCAGACCGGGTCCGGTAAGACGGCTGCATTCTGTTTTCCTATTATAGCTGGCATACTAAGGAGCAACCCGCCACCGCGCCCCCGTGCAGGGCGGAAGACGTTTCCTTTGGCTCTTATTCTGTCACCAACAAGAGAATTGTCTTGCCAGATACATGAAGAGGCTAGAAAGTTTGCATATCAAACTGGCATCAAGGTAGTGGTTGCTTATGGAGGGGCGCCTATTACTGCACAGCTTCGGGAGTTGGAGAGGGGTGTTGATATTCTTGTTGCAACTCCGGGACGGCTTGCGGATCTTCTTGAGAGGGGTAGGGTTTCCCTTTCAATGGTGAAATATTTGGCCCTGGATGAGGCAGATCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAAATAGTGGAACAGATGGACATGCCAACAGCTGGGGAAAGGCAAACATTGCTGTTCAGTGCTACTTTTCCAAAAGAAATACAGAGGTTGGCTTCGGATTTTCTCTACAATTACATTTTTCTAGCTGTTGGTAGAGTGGGATCCAGTACAGATCTTATTATTCAGAGAGTTGAATATGTCCAAGAGCCGGAGAAAAGAAGCCATCTAATGGATCTCATCCATGCTCAAAAAACTAGCGGGGCTCATGGAAAGCATGCTTTGACTTTAGTGTTTGTGGAGACAAAGAGGGGTGCTGACTCATTGGAATACTGGCTATGTAACAATGGTTTTCCAGCAACTTCAATTCACGGGGACAGATCACAGCAGGAGCGAGAACAAGCACTGAGATCTTTCAAGAGTGGCGTAACTCCTATTCTAGTTGCCACTGACGTTGCAGCACGGGGACTTGACATTCCACATGTGGCTCATGTTATTAATTTTGACCTACCAAATGATATCGATGATTATGTTCACCGTATAGGACGTACAGGTCGAGCTGGGAATTCAGGTTTAGCCACTGCATTTTTTAATGAAGGGAACCTATCTATATCAAAGCCACTCGCTGAACTTATGCATGAATCAAACCAAGAAGTTCCAGCATGGTTACAGAAATATGCTTCAAGATCTTCATATGGTGGTGGGGGACGAAATCGGCGATCTGGAGGTGGCAGGTTTGGTGGTCGTGATTTCCGAAGGGATGGAGGCAGAGGGGGTGGCGACCGTTATGGAGGTTCACATGGTAACTCGGGAAATGCATATGGATCACCCGTGACATATGGTGGTTACAGCAATCCTAACTTTTCTAGTGCATGGGATTAATGAAGCCACAAAGGCTTGATTGACCGGGTTGGGTTTATGACATGGCAGTGGTATGCTGTCTGAGGTCATGCAGATCTTTTCACTTTGAGATAGAACCTGAAGATTTTGTGTTGCAACAGTAATCTTGCCCTCCAACAGTTTTGAACTGTTGAGATATAAAGCAGCATGGATTTCACTGGTTTTGTTACGCTGAAGCAACTATGGTCAATCAACTCGTACTTGCAGATAGTAGGTGAGCACAAATTTTGCTGGCTTACCAGTCTTGTGTATAGTAGCTGCCAAAGCTGGAAATTTGAAGGCTTAGATTGCAGTTTTAGCTCTTGATTCTTGAGAGGCACCATCTTCCTTTTGTTACAACAATTTCGTAGATGTACTTTTTCATGTCGTTTCCACTCCATAGCAGACTCGGTTGAAATGCATTAATGGGATCTGGCATGATGTATTTTTCAGTCAGGGATCAGGTGGTTGGTTACTCTTTTAACATTTTGTGGGAATATATACACCAGAGGCAGTATATATCTCCTAACATATTCTCGTCTTATGTAAAGTATAGAGATAGAGATAGACGAATGACTGACTTTTATTATGATACTCATGAAGAACATATTTGGTCCTCTTGATTTATCCTTCTAGTAAGCACGTGGATTTTGCTGCGTGTGCCTGCTGGAACATTGGTCTTCATATCACCTTATATGATACTGATTAGAAGTAATGGTGCAATTGGAGTACATTATCACAAAATGTATGAGTTCATTTTGAGATGATATGCCAGTTTTTTTATGTTTATTTACTGTTTAGTCTACCTGACTTGGATGTTTATGTATCACTAGGTTGTGTTTTGGT

Ace file of the UniGene sp_v1.1_unigene11610

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	80%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	80%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	peroxisome	GO:0005777	Cellular Component	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	80%
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	80%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	80%
Blast2go	RNA helicase, DEAD-box type, Q motif	IPR014014	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: your sequence is longer than subject: 636 - 593

Fln protein: MVSAWADSGPVLAAEKVSVNGNPAPPAPRPSRESYVPPHMRNRESQLSNASVPPPPVPSAPANPSSGWNRDVGVSRPLSRTGSWAAESEKSEKSLGWDEKPVWGEKPSWGASGGRGWGNTTSNARSSGSRDREVNPFAKDLKADDVFDQVNTGINFDAYEDIPVETSGVHVPPPVNTFAEIDLGEALNLNIKRCKFAKPTPVQKYAIPISLAGRDLMACAQTGSGKTAAFCFPIIAGILRSNPPPRPRAGRKTFPLALILSPTRELSCQIHEEARKFAYQTGIKVVVAYGGAPITAQLRELERGVDILVATPGRLADLLERGRVSLSMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPTAGERQTLLFSATFPKEIQRLASDFLYNYIFLAVGRVGSSTDLIIQRVEYVQEPEKRSHLMDLIHAQKTSGAHGKHALTLVFVETKRGADSLEYWLCNNGFPATSIHGDRSQQEREQALRSFKSGVTPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNEGNLSISKPLAELMHESNQEVPAWLQKYASRSSYGGGGRNRRSGGGRFGGRDFRRDGGRGGGDRYGGSHGNSGNAYGSPVTYGGYSNPNFSSAWD*

Protein Length: 637

Fln nts: CGTCGTGCTTGCTGTATTCCAGGGCTTCGGCTCTTTCATACCAGAGGTGTTCGTTGTTTGTCCATCTTTTGCTGCAAGGGTTGCGGATGAATGTGAGCGATTGTTGTTGCGTTCGGCCATGTGATGAGCGTGTTCCGGTTGTTGATCTGCGGTGAATAATCTTCAAATCGAGGTCTAGATCGCTTTAGTCCGTGTAGTTTTGGGTCGGATTTGGTTTGATTCCGGGTTACAGCGGGTGTGGATTTATACGTTGCAAGGGGTTTCGTTCTGATTGGCGCAGTAAGCAGGGTTTTGTTTGGGAATTGCACTGGGTGTGAGGTATATGATCAAGTTGCTGCAAAGAGCGAAATAATCGTAGGATTTTATGTTTGGGTTGGTGCGAAGCTGCGTGTAAAGCGCGTAAAGTTGCGGTATTTAAGTAAATCGCGGTTGGGAGTACTTGGAAGAGACTTGAATAGAGTTCAATCTCGCGGGAAGCGTATAAATTCGGGGTATTTGGTATGTTATAAAAGGCAGACGTCTCTTTGCTCAATTTATATACATTATTCTTCTGAAACTTACGGAGGAAGCTGCTTCAGTTGTGTGTATTTGCTCTTAGGGCCTTTCTTGGAGGACTCGCTCAAGAGTTTCAGAGTTCAATTCTTGTTTAGACGCAAGAAACACAAAAAGTTTACTGCTGAATTGGACCAGCGATTTTTACACTGCTTTCGATCGAATCGAACCAGAGAGCGATCTTTATATTATTTTAATGGTCTTCTTCAGTTGAATATTTTCGAAATATCTCTACAGCATTTTTGACTGCCAAAAAGGATAGAACCGGCTGTCTTTACAGCATTTTCCACCGTTAAGAGGAATCGAGCCGGCAATAAACACAGCATTTCTCTGATTAGGGCTTAGTCCTACCAAGTTCCAAGT_-_ATGGTAAGCGCGTGGGCTGATTCAGGGCCGGTCTTGGCCGCAGAGAAGGTGTCGGTGAACGGAAACCCTGCTCCTCCCGCGCCCCGACCCTCCCGCGAGTCGTATGTTCCGCCGCATATGCGCAACCGCGAATCGCAGTTGTCCAATGCTTCTGTGCCGCCCCCTCCGGTGCCTTCTGCACCTGCCAATCCGTCTTCCGGTTGGAACAGGGACGTTGGGGTTTCTCGGCCTCTCTCAAGGACGGGATCTTGGGCAGCCGAGAGTGAAAAATCTGAAAAGTCTCTAGGCTGGGATGAGAAGCCCGTCTGGGGCGAAAAACCCTCATGGGGTGCATCGGGAGGACGCGGGTGGGGTAATACTACCTCCAATGCTCGTTCTAGTGGCTCTCGAGACCGCGAAGTAAACCCCTTCGCTAAAGACTTGAAAGCCGACGATGTCTTTGACCAGGTGAATACGGGTATAAACTTCGATGCATACGAAGACATTCCTGTGGAGACAAGCGGAGTCCATGTACCTCCTCCTGTCAATACTTTTGCTGAAATTGATTTGGGAGAGGCCCTAAATCTGAATATCAAGAGGTGTAAGTTTGCTAAGCCGACTCCCGTGCAGAAATATGCGATACCTATTTCGTTAGCTGGCCGAGATTTAATGGCGTGCGCCCAGACCGGGTCCGGTAAGACGGCTGCATTCTGTTTTCCTATTATAGCTGGCATACTAAGGAGCAACCCGCCACCGCGCCCCCGTGCAGGGCGGAAGACGTTTCCTTTGGCTCTTATTCTGTCACCAACAAGAGAATTGTCTTGCCAGATACATGAAGAGGCTAGAAAGTTTGCATATCAAACTGGCATCAAGGTAGTGGTTGCTTATGGAGGGGCGCCTATTACTGCACAGCTTCGGGAGTTGGAGAGGGGTGTTGATATTCTTGTTGCAACTCCGGGACGGCTTGCGGATCTTCTTGAGAGGGGTAGGGTTTCCCTTTCAATGGTGAAATATTTGGCCCTGGATGAGGCAGATCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAAATAGTGGAACAGATGGACATGCCAACAGCTGGGGAAAGGCAAACATTGCTGTTCAGTGCTACTTTTCCAAAAGAAATACAGAGGTTGGCTTCGGATTTTCTCTACAATTACATTTTTCTAGCTGTTGGTAGAGTGGGATCCAGTACAGATCTTATTATTCAGAGAGTTGAATATGTCCAAGAGCCGGAGAAAAGAAGCCATCTAATGGATCTCATCCATGCTCAAAAAACTAGCGGGGCTCATGGAAAGCATGCTTTGACTTTAGTGTTTGTGGAGACAAAGAGGGGTGCTGACTCATTGGAATACTGGCTATGTAACAATGGTTTTCCAGCAACTTCAATTCACGGGGACAGATCACAGCAGGAGCGAGAACAAGCACTGAGATCTTTCAAGAGTGGCGTAACTCCTATTCTAGTTGCCACTGACGTTGCAGCACGGGGACTTGACATTCCACATGTGGCTCATGTTATTAATTTTGACCTACCAAATGATATCGATGATTATGTTCACCGTATAGGACGTACAGGTCGAGCTGGGAATTCAGGTTTAGCCACTGCATTTTTTAATGAAGGGAACCTATCTATATCAAAGCCACTCGCTGAACTTATGCATGAATCAAACCAAGAAGTTCCAGCATGGTTACAGAAATATGCTTCAAGATCTTCATATGGTGGTGGGGGACGAAATCGGCGATCTGGAGGTGGCAGGTTTGGTGGTCGTGATTTCCGAAGGGATGGAGGCAGAGGGGGTGGCGACCGTTATGGAGGTTCACATGGTAACTCGGGAAATGCATATGGATCACCCGTGACATATGGTGGTTACAGCAATCCTAACTTTTCTAGTGCATGGGATTAA___TGAAGCCACAAAGGCTTGATTGACCGGGTTGGGTTTATGACATGGCAGTGGTATGCTGTCTGAGGTCATGCAGATCTTTTCACTTTGAGATAGAACCTGAAGATTTTGTGTTGCAACAGTAATCTTGCCCTCCAACAGTTTTGAACTGTTGAGATATAAAGCAGCATGGATTTCACTGGTTTTGTTACGCTGAAGCAACTATGGTCAATCAACTCGTACTTGCAGATAGTAGGTGAGCACAAATTTTGCTGGCTTACCAGTCTTGTGTATAGTAGCTGCCAAAGCTGGAAATTTGAAGGCTTAGATTGCAGTTTTAGCTCTTGATTCTTGAGAGGCACCATCTTCCTTTTGTTACAACAATTTCGTAGATGTACTTTTTCATGTCGTTTCCACTCCATAGCAGACTCGGTTGAAATGCATTAATGGGATCTGGCATGATGTATTTTTCAGTCAGGGATCAGGTGGTTGGTTACTCTTTTAACATTTTGTGGGAATATATACACCAGAGGCAGTATATATCTCCTAACATATTCTCGTCTTATGTAAAGTATAGAGATAGAGATAGACGAATGACTGACTTTTATTATGATACTCATGAAGAACATATTTGGTCCTCTTGATTTATCCTTCTAGTAAGCACGTGGATTTTGCTGCGTGTGCCTGCTGGAACATTGGTCTTCATATCACCTTATATGATACTGATTAGAAGTAATGGTGCAATTGGAGTACATTATCACAAAATGTATGAGTTCATTTTGAGATGATATGCCAGTTTTTTTATGTTTATTTACTGTTTAGTCTACCTGACTTGGATGTTTATGTATCACTAGGTTGTGTTTTGGT

Fln Alignment:

sp_v1.1_unigene11610___GASGGRGWGNTTSNARSS-GSRDRE--------------VNPFAKDLKADDVFDQVNTGINFDAYE---DIPVETSGVHVPPPVNTFAEIDLGEALNLNIKRCKFAKPTPVQKYAIPISLAGRDLMACAQTGSGKTAAFCFPIIAGILRSNPPPRPRAGRKTFPLALILSPTRELSCQIHEEARKFAYQTGIKVVVAYGGAPITAQLRELERGVDILVATPGRLADLLERGRVSLSMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPTAGERQTLLFSATFPKEIQRLASDFLYNYIFLAVGRVG-SSTDLIIQRVEYVQEPEKRSHLMDLIHAQKTSGAHGKHALTLVFVETKRGADSLEYWLCNNGFPATSIHGDRSQQEREQALRSFKSGVTPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNEGNLSISKPLAELMHESNQEV
C0PQ26_______________GYEGGRGGGRGYDGGRGGRGGRDRRELDSVALPKEDFDNLIPFEKNFYVEHPAVAALSDHEVSAYRKRREITVE--GRDVPKPLRSFREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHI-----NAQPHLAHGDGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQI----RPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLLE-EIMDGSR-----ILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEAGQRV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
215		14	85		0.993533
218			14	85	0.993533
222		14		85	0.993533
223		14		85	0.993533
224		85		14	0.993533
225		85		14	0.993533
228		14	85		0.993533
230			14	85	0.993533
231	85			14	0.993533
237			85	14	0.993533
238		14	85		0.993533
239	14			85	0.993533
342	80		20		0.995493
622			23	76	1.0
634	15		84		0.999986
682	85		14		0.993533
698		14		85	0.993533
720		85		14	0.993533
904	60		40		1.0
941	16		33		1.0
2644		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain