SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11609

Length: 2378 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11609
ATGGGGGAATGAATGCGAGTTAGGTACCCAACGAGCGAGGGCGGGAATGGGAATGAGAATGGGAATGTACCAGAGCTCAGATGATACTCCTTTTAGGAAGGGAGAGAAATGAGATAGATATAGGATCCAGTTCAGTTTCAGTTCGAGTTTCCAGAAGTGGGTCAGATTGGGCGCAGCGGGAGCTTCCAATGAGGATGAGACTGATATGAGGTATTTCTATTCATCAACAATAAATTTCTGTAAAAACTAACTGGTAGGCTGCAAGGCAAAGATTATAGATGTTTTGCATAAACTAGGCTTTCTTATATAAAACATTCTCTATATTTCTAGAGATCTATGGGAAGGGACTAGTTTCGCTTATCGTGTCCTTCAATGAGCCCTCTGGCCTCTTTTAGCTATGCTTAAATAAACGAGATCGAGATTCGATTTCGATTTTGAGCTGGAACTTGAGTGTTGAAATAATACATACATACATAGAAATTAAACAGTCACAGTAATACTTGGTTCCAATTAATTCATTGGAAGGGGGTGCAATTTAGAGGATCTTGTAATGGGATATCTATCATGTAGAGCTGATTCTGCAGTGATAATATGTGAGTCGTACAAGAAGGAGAAGCCTTCCAAAGTTCAGCAGTTTCAGTATAAAGACTTGGTGGTTGCCACTGGAGGATTTGCAGGGGAAAGTCTGTTAGGAAAAGGCAGCCATGGTTGTGTGTATAAGGGTGTTTTAGGAGATGGTTCTCTTGTAGCTATCAAAAAACCTTCATCTGGACTCCGGATTTTACAAGATGACAGTGCAGTTGAGAATGAGATTGAAATCCTATCTAAACTACACAGTCCAAGGCTTGTTAATTTAATAGGTTTCAGTCATGATACAAAGGAACGGCTCTTAGTGGTAGAGTTTATGTCCAATGGGACTCTCCATGATATTTTGCACTCTGATCCTCAATCACCCAGTTGGCCTAGAAGAGTTCACTTGTCTTTGCAGATTGCTAAGGCTATATTAACATTGCATAGTGCAAGCCCACCTGTAATTCACCGAGACATCAAGTCCTCAAATGTTTTAATTGATGCAAACTGGAATGCAAGGCTTGGCGATTTTGGTCTTGCTCTGAGGGGCCACGTTGAGGATATTAAGCTTAATTCAACACCCCCTGCTGGTACGATAGGTTACTTGGATCCGGGTTACATCACGCCTGGGAACCTTAGTACTAAAAATGATGTCTTCAGCTTTGGAATTCTTCTTTTGGAGATAATAAGTGGCAGAAATGCCATTGATGTTCAGTACAGCCCACCTTCCATTGTTGACTGGGCAATGCCATTGATCAGGCAGAACAAGATACTTGAATTATATGATCCCAGGCTGAGTCCGCCAAAGAATCTAAACACAGTAAAAGCAGATGGCTGTTATTGCGGCTCGATGTATCAGATCCACCGAGGAGAGGAGACCTTCCATGAACGAAGTTGTGGAGGGCTTAAACAAGTAAGTCGGAGTATTCCCCTACCCATTTGGAATGGCCTCAAAAGACAAAAGAAGAAACCTACCAGGGAGGGCAANCCTCAGTTGACAGAAAGAAGTGATAAAAATTATGTGGCGGGACAAATGAAGCCTTCTGATAGAAGTGAAAGTTTGAATGAGTTCTCAAGGAGCTTGAAGTCTTCGGGCAAAGGACCCTCTAGGAGTACAAGAGTCTCAGATGAGGATACCAGATTAGATGTTGGTAAAGAGTTTTGTAAAACTGGCAGTGGTGTTGCAAGACGTGGAAGTGGGAGAATTTTGGTTGATTTGTTCAATGAAACAACAGAAAGCTCCGAAACCAAAAAAATAGATAGGCAGGTTCTTTCAAAGGCTGGAAGCTCATCTGTGAGGGTGCCCAGTGTTACATTGAGACAGGCAATGCTTGTTAGAAACTCACCTACATCATCAGCATTCAGGTCTGACCCTACACCAGTCTTTGGTGACCATTGCAAAAATGCTGTAGGACAAATTGCGAGAAATCATTCTTGTGGGAAATGTAAGAAAATCACACTTTCGCAGAGATCATACCTTGCATTACAAGCAAATACCTCAGGTAACAAATTTTAACATCTTTGAGGATACCAGCTAGCAGGCCTTGAATGGCTTGAGTTTCAAAGGAACAGAAGAAGCTTTAGTACAAGGCTTAGATTTGGTAAAGTGCAATGAGAACTTATCAAGACTGCCGATATTTTTTCTGTTCTTTATGAGCATTGTAGTGCTTTCTGTAAATTCTGTTATTTCCACAGAAGCCAAAAAAATTCAAAATGAGAATCTTGGATTGTCTCTCATTCACTCTTTTTTCATTATCTGATTGATTTGTTGCTGCATTAGCCCATGACCATTTTANGATTCGGCTGCT

Ace file of the UniGene sp_v1.1_unigene11609

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase APK1B, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SPN3_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	69%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	69%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	69%
Blast2go	ATP binding	GO:0005524	Molecular Function	69%
Blast2go	intracellular	GO:0005622	Cellular Component	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRZ4

Fln msg:

Fln protein: MGYLSCRADSAVIICESYKKEKPSKVQQFQYKDLVVATGGFAGESLLGKGSHGCVYKGVLGDGSLVAIKKPSSGLRILQDDSAVENEIEILSKLHSPRLVNLIGFSHDTKERLLVVEFMSNGTLHDILHSDPQSPSWPRRVHLSLQIAKAILTLHSASPPVIHRDIKSSNVLIDANWNARLGDFGLALRGHVEDIKLNSTPPAGTIGYLDPGYITPGNLSTKNDVFSFGILLLEIISGRNAIDVQYSPPSIVDWAMPLIRQNKILELYDPRLSPPKNLNTVKADGCYCGSMYQIHRGEETFHERSCGGLKQVSRSIPLPIWNGLKRQKKKPTREGKPQLTERSDKNYVAGQMKPSDRSESLNEFSRSLKSSGKGPSRSTRVSDEDTRLDVGKEFCKTGSGVARRGSGRILVDLFNETTESSETKKIDRQVLSKAGSSSVRVPSVTLRQAMLVRNSPTSSAFRSDPTPVFGDHCKNAVGQIARNHSCGKCKKITLSQRSYLALQANTSGNKF*

Protein Length: 513

Fln nts: ATGGGGGAATGAATGCGAGTTAGGTACCCAACGAGCGAGGGCGGGAATGGGAATGAGAATGGGAATGTACCAGAGCTCAGATGATACTCCTTTTAGGAAGGGAGAGAAATGAGATAGATATAGGATCCAGTTCAGTTTCAGTTCGAGTTTCCAGAAGTGGGTCAGATTGGGCGCAGCGGGAGCTTCCAATGAGGATGAGACTGATATGAGGTATTTCTATTCATCAACAATAAATTTCTGTAAAAACTAACTGGTAGGCTGCAAGGCAAAGATTATAGATGTTTTGCATAAACTAGGCTTTCTTATATAAAACATTCTCTATATTTCTAGAGATCTATGGGAAGGGACTAGTTTCGCTTATCGTGTCCTTCAATGAGCCCTCTGGCCTCTTTTAGCTATGCTTAAATAAACGAGATCGAGATTCGATTTCGATTTTGAGCTGGAACTTGAGTGTTGAAATAATACATACATACATAGAAATTAAACAGTCACAGTAATACTTGGTTCCAATTAATTCATTGGAAGGGGGTGCAATTTAGAGGATCTTGTA_-_ATGGGATATCTATCATGTAGAGCTGATTCTGCAGTGATAATATGTGAGTCGTACAAGAAGGAGAAGCCTTCCAAAGTTCAGCAGTTTCAGTATAAAGACTTGGTGGTTGCCACTGGAGGATTTGCAGGGGAAAGTCTGTTAGGAAAAGGCAGCCATGGTTGTGTGTATAAGGGTGTTTTAGGAGATGGTTCTCTTGTAGCTATCAAAAAACCTTCATCTGGACTCCGGATTTTACAAGATGACAGTGCAGTTGAGAATGAGATTGAAATCCTATCTAAACTACACAGTCCAAGGCTTGTTAATTTAATAGGTTTCAGTCATGATACAAAGGAACGGCTCTTAGTGGTAGAGTTTATGTCCAATGGGACTCTCCATGATATTTTGCACTCTGATCCTCAATCACCCAGTTGGCCTAGAAGAGTTCACTTGTCTTTGCAGATTGCTAAGGCTATATTAACATTGCATAGTGCAAGCCCACCTGTAATTCACCGAGACATCAAGTCCTCAAATGTTTTAATTGATGCAAACTGGAATGCAAGGCTTGGCGATTTTGGTCTTGCTCTGAGGGGCCACGTTGAGGATATTAAGCTTAATTCAACACCCCCTGCTGGTACGATAGGTTACTTGGATCCGGGTTACATCACGCCTGGGAACCTTAGTACTAAAAATGATGTCTTCAGCTTTGGAATTCTTCTTTTGGAGATAATAAGTGGCAGAAATGCCATTGATGTTCAGTACAGCCCACCTTCCATTGTTGACTGGGCAATGCCATTGATCAGGCAGAACAAGATACTTGAATTATATGATCCCAGGCTGAGTCCGCCAAAGAATCTAAACACAGTAAAAGCAGATGGCTGTTATTGCGGCTCGATGTATCAGATCCACCGAGGAGAGGAGACCTTCCATGAACGAAGTTGTGGAGGGCTTAAACAAGTAAGTCGGAGTATTCCCCTACCCATTTGGAATGGCCTCAAAAGACAAAAGAAGAAACCTACCAGGGAGGGCAAaCCTCAGTTGACAGAAAGAAGTGATAAAAATTATGTGGCGGGACAAATGAAGCCTTCTGATAGAAGTGAAAGTTTGAATGAGTTCTCAAGGAGCTTGAAGTCTTCGGGCAAAGGACCCTCTAGGAGTACAAGAGTCTCAGATGAGGATACCAGATTAGATGTTGGTAAAGAGTTTTGTAAAACTGGCAGTGGTGTTGCAAGACGTGGAAGTGGGAGAATTTTGGTTGATTTGTTCAATGAAACAACAGAAAGCTCCGAAACCAAAAAAATAGATAGGCAGGTTCTTTCAAAGGCTGGAAGCTCATCTGTGAGGGTGCCCAGTGTTACATTGAGACAGGCAATGCTTGTTAGAAACTCACCTACATCATCAGCATTCAGGTCTGACCCTACACCAGTCTTTGGTGACCATTGCAAAAATGCTGTAGGACAAATTGCGAGAAATCATTCTTGTGGGAAATGTAAGAAAATCACACTTTCGCAGAGATCATACCTTGCATTACAAGCAAATACCTCAGGTAACAAATTTTAA___CATCTTTGAGGATACCAGCTAGCAGGCCTTGAATGGCTTGAGTTTCAAAGGAACAGAAGAAGCTTTAGTACAAGGCTTAGATTTGGTAAAGTGCAATGAGAACTTATCAAGACTGCCGATATTTTTTCTGTTCTTTATGAGCATTGTAGTGCTTTCTGTAAATTCTGTTATTTCCACAGAAGCCAAAAAAATTCAAAATGAGAATCTTGGATTGTCTCTCATTCACTCTTTTTTCATTATCTGATTGATTTGTTGCTGCATTAGCCCATGACCATTTTAcGATTCGGCTGCT

Fln Alignment:

sp_v1.1_unigene11609___MGYLSCRADSAVIICESYKKEKPSKVQQFQYKDLVVATGGFAGESLLGKGSHGCVYKGVLGDGSLVAIKKPSSGLRILQDDSAVENEIEILSKLHSPRLVNLIGFSHDTKERLLVVEFMSNGTLHDILHSDPQSPSWPRRVHLSLQIAKAILTLHSASPPVIHRDIKSSNVLIDANWNARLGDFGLALRGHVEDIKLNSTPPAGTIGYLDPGYITPGNLSTKNDVFSFGILLLEIISGRNAIDVQYSPPSIVDWAMPLIRQNKILELYDPRLSPPKNLNTVKADGCYCGSMYQIHRGEETFHERSCGGLKQVSRSIPLPIWNGLKRQKKKPT-REGKPQLTERSDKNYVAGQMKPSDRSESLNEFSRSLKSSGKGPSRSTRVSDEDTRLDVGKEFCKTGSGVARRGSGRILVDLFNETTESSETKKIDRQVLSKAGSSSVRVPSVTLRQAMLVRNSPTSSAFRSDPTPVFGDHCKNAVGQIARNHSCGKCKKITLSQRSYLALQANTSGNKF
B8LRZ4_______________MGYLSCRAESAVITCESYKKEKPSKVQLFPYKDLVVATGGFAGESLLGKGSHGCVYKGVLGDGTLVAIKKSSSGLRILQDDSAVENEIEILSKLHSPRLVNLIGFSHDTKERLLVVEFMCNGTLHDILHSDPQSPSWPRRVHLSLQIAKAILTLHSASPPVIHRDIKSSNVLIDANWNARLGDFGLALRGHVEDIKLNSTPPAGTIGYLDPGYITPGNLSTKNDVFSFGILLLEIISGRNAIDVQYSPPSIVDWAMPLIRQNKILELYDPRLSPPKNLNTIKHMALIAARCVRSTEERRPSMNEVVEGLKQVSRSIPLPIWDGLKRQKKKPTIRQDKPQLTERSGKHYVAGQMKPSDTIESLNGFPRSLKSSGKGSSRSTRVSDEDTRLDVGKEFCKTGS-VARRGSGRILVDFFNETTEISETKKIDRQALAKSGSSSVRVPSVTLRQAMLVRSSPTSSAFRSDASPVFGDHCKNGIGQTVRNHSCGKCKKITLSQRSYFALQANTSGNKF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
658			14	85	0.993533
779		85		14	0.993533
943		75		25	0.996473
1023	75		25		0.996473
1765		50	50		1.0
2179			11	88	0.923564
2320	25			75	0.996473
2321	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
462	476	ATAC ATAC ATAC ATA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain