SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11601

Length: 914 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene11601 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lipase, putative	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	64%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDSL	IPR001087	-	0.0	64%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
401	87		12		0.992554
617	75			25	0.996473
618	25			75	0.996473
627			75	25	0.996473
628	75			25	0.996473
629			75	25	0.996473
631	75			25	0.996473
712	33	66			0.997452
856	66	33			0.997452
857		33		66	0.997452
858		33	33		0.997753
859	33	33		33	0.997753
860		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain