SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11494

Length: 2759 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11494
CGTCGTGACCTTGGCTGTCACGTCAATTTCTTTGAAGGGTATGAAGTGAATGGAAGTGGGAAGCTGCAGGAATGGCAAGTATTTGGAGCACCCAAGTCACGGTATTCCGTTTATAGAACCATAAACAATAAATTCCAGGGTCCCTCCCTCCTTCTGAATCTCTCCCTGCTCATGTTCGGCGCATTTGATGGTGGGTTATCTGAAAGATATGATTGCATTTTGAAAGAGCAGCTAAGAAGAAGTCAACATCTGGGGATCCAAGAAAGAGGGATTTGAAGAAGGGAAAGATCTTGGCGGGCATGATCCAGTGAGCGAGGGAGCTATGAATCGGGGTTCGAGTTCCGCGGACTCCGCTTACCTGATGCAGCTGCAGCAGCAGCACAGGCGGGTGCGTAGTCTCAGCTCCAGTTTGGTCAAAGAGAAGGACGATGATCTTGCATTGTTTCACGAGATGCGCAAACGAGAAAAGGAGCGGAACACGCTTCTGCTCCTTCCCAACTCGGACGAGTTCGAACCACCCCTTGCCACGGTCAAGCCTAGCAGCTCACCCATATACAAAATAACACCGTCTACCCCCTTGCCAAAAAGCAGGGCAGATGACTTGTTAAATGCAGATGGAGATAAGAATGATTATGACTGGCTTCTCACACCACCTGGTACACCTCTTTTTACTTCATTGGAAATGGAGATACCAGCCATTCCTATGGATCAAAGAGGAACACCTGTACTCAAGCCACCACCCAATTTGAAGTCTTCTAGACTCTTGAACCCAGGGTTGGAACCAACATCGAAGATTGTGCGCAATAATTTCCCTTCACGCCAAACAGCCTCTTCTTTGTCAAACAATTCTCTCAACACAGTAAGTAAGAGACCATCAATGTCCACTGGTACTGGTCATGTTTCATCTAGGCCTTCCACCCCTACCTCAAGGTCTGTTGTTCCTTCATCAATGGCAGCAGTACCTGCATCAAGGTCGGCAGTGCCTGCATCAAGGCCAGCAGTGTCCGCATCAAGGCCAGTAGCACCTGCATCAAGACCAGCAGCACCTGCATCAAGGTCTTCATTGACTGCATCAAGGCCTTCTACCCCTACATCAAGACCTACAATTTCTGCATCAAGAGCTTCAGTGACTGCATCAAGGCCTTCTACTCCCACATCAAGGTCTACACTTCCTGCAACGAGGTCTACACTTCCTGTAACAAGGCCATCATCAAGACCTTCCACACCAACAAGGCGTCCATCAACTCCAAACCTCAACCAAAGTAATTCTGGTCCACCACCAGCCCGTTCTTCTTCTGTTGGAAAGTCAACCTCAATGCCTTCCAGGAATTCAGCTCCTTCACGAGGAAGTTCTCCTACTTTAAAATCACAACCTTGGCAACCAACAGCAATCCCTGGTTTTTCACTTGACGCACCTCCAAATTTAAGGACTACTATGCCAGAGCGACCTCCTTCAGCTACGAGAGGTAGACCTGGAGCTCCAAGTGCTGCACGATCTGCTAATGAGGCACCCATTGCAAGTAGCAGGCCAAGAAGACAGTCATGCTCTCCAAGTGTCACAAGGGGAAGAATTTCAAATGATAGCCAGAACAGTGACCGGTCCAGTGTACAATCTAGCAAATCACATAGTATTGGTAATAACATTGCAGTGTCAGGTGTAATTGGCAGCAAGATGGTTGAAAAGGTGTTGAATGCAAGAAGAGCTGCTCCAAAACAGCAGGAAGATCAATCATCTGTGAGGTCTATCTCATCTACAACACAAGCTAAACGGCCAGTGAAGCCAGTATTATCTCCAGATAGCACAGGCTTTGGAAGGACGCTCTCAAAAAAATCTTTGGATATGGCTTTAAGACACATGGATATACGGCGAAGTACACCCAATAGCTTGCGTCCCTTGATGACCAACATTCCAACATCATCTCTATACAGTGTCCGATCAGGTGCTCCTAGAAGCAGGGCAACTAGTATATCTGACTCTCCAGTGGCGACAAGCAGCAATGCCAGTTCAGAGCATAGTGCAAGCATTGCTCTAGGTCCAGAAGGGAGTGAATTGGATGATGATGATTTTGGAAGTGAGAGGGGTAGTAGAACCTCCCCAACAAGTCAGCAAGGTAGCATTCTTTCCAAGGGAGATCTAGGGAGCACAAACTGGCTGCACAGTCCAGAATTTCGAGATGATAAGTATGATCAGGCGTTCTTGTACAACCGAGGATTTGAACAATTATTGGATCCATTGGAAGGTCCTGTAAGTGCAACAAGTGGTAGCACAGATTGTGAAAGTAAAATCAGATTAGAATACTGACCTAAGAGACCCTACATATTGTTACACCTTCAGAGCTTGGTGGACTTAATGTATCGTGGTGACTCATTAAAGGACGGTCTTATTACCAGAAATTCTTCAGAGACTAATCATTAATGTACAACCTACTACAGTTTTTGCAAAAGCACAATCCAGAAGTAGCCAGTACTGTTTCAAAATGTTAGTTTTGTGCCTGCTGATTCAGTATTGCAGAAATCCAAGTATATAAAATTAGGATTAAATGTCAGAGACGTGTAATATCAGCCAATTGCTGGAATTAAATTAGGTTGGAATGAGCAGTCATTATGTTGGATGATGATGAACTAGGTCTTTGATTTTCATGAACTAGTCCGGCGATTGAATTAAATGGGTGGAAAATGAAGCACCATAGCAGGAGTTGGTTGTTTTAAATGCTTCTGGTTTCATTGGAAATCTGCTTTGGAGTTCATCTTGCAATGAA

Ace file of the UniGene sp_v1.1_unigene11494

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Herpes_BLLF1 multi-domain protein	-	-	4.0e-13	19%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	50%
Blast2go	atp binding	-	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HHM7

Fln msg: your sequence is longer than subject: 660 - 565

Fln protein: MNRGSSSADSAYLMQLQQQHRRVRSLSSSLVKEKDDDLALFHEMRKREKERNTLLLLPNSDEFEPPLATVKPSSSPIYKITPSTPLPKSRADDLLNADGDKNDYDWLLTPPGTPLFTSLEMEIPAIPMDQRGTPVLKPPPNLKSSRLLNPGLEPTSKIVRNNFPSRQTASSLSNNSLNTVSKRPSMSTGTGHVSSRPSTPTSRSVVPSSMAAVPASRSAVPASRPAVSASRPVAPASRPAAPASRSSLTASRPSTPTSRPTISASRASVTASRPSTPTSRSTLPATRSTLPVTRPSSRPSTPTRRPSTPNLNQSNSGPPPARSSSVGKSTSMPSRNSAPSRGSSPTLKSQPWQPTAIPGFSLDAPPNLRTTMPERPPSATRGRPGAPSAARSANEAPIASSRPRRQSCSPSVTRGRISNDSQNSDRSSVQSSKSHSIGNNIAVSGVIGSKMVEKVLNARRAAPKQQEDQSSVRSISSTTQAKRPVKPVLSPDSTGFGRTLSKKSLDMALRHMDIRRSTPNSLRPLMTNIPTSSLYSVRSGAPRSRATSISDSPVATSSNASSEHSASIALGPEGSELDDDDFGSERGSRTSPTSQQGSILSKGDLGSTNWLHSPEFRDDKYDQAFLYNRGFEQLLDPLEGPVSATSGSTDCESKIRLEY*

Protein Length: 661

Fln nts: CGTCGTGACCTTGGCTGTCACGTCAATTTCTTTGAAGGGTATGAAGTGAATGGAAGTGGGAAGCTGCAGGAATGGCAAGTATTTGGAGCACCCAAGTCACGGTATTCCGTTTATAGAACCATAAACAATAAATTCCAGGGTCCCTCCCTCCTTCTGAATCTCTCCCTGCTCATGTTCGGCGCATTTGATGGTGGGTTATCTGAAAGATATGATTGCATTTTGAAAGAGCAGCTAAGAAGAAGTCAACATCTGGGGATCCAAGAAAGAGGGATTTGAAGAAGGGAAAGATCTTGGCGGGCATGATCCAGTGAGCGAGGGAGCT_-_ATGAATCGGGGTTCGAGTTCCGCGGACTCCGCTTACCTGATGCAGCTGCAGCAGCAGCACAGGCGGGTGCGTAGTCTCAGCTCCAGTTTGGTCAAAGAGAAGGACGATGATCTTGCATTGTTTCACGAGATGCGCAAACGAGAAAAGGAGCGGAACACGCTTCTGCTCCTTCCCAACTCGGACGAGTTCGAACCACCCCTTGCCACGGTCAAGCCTAGCAGCTCACCCATATACAAAATAACACCGTCTACCCCCTTGCCAAAAAGCAGGGCAGATGACTTGTTAAATGCAGATGGAGATAAGAATGATTATGACTGGCTTCTCACACCACCTGGTACACCTCTTTTTACTTCATTGGAAATGGAGATACCAGCCATTCCTATGGATCAAAGAGGAACACCTGTACTCAAGCCACCACCCAATTTGAAGTCTTCTAGACTCTTGAACCCAGGGTTGGAACCAACATCGAAGATTGTGCGCAATAATTTCCCTTCACGCCAAACAGCCTCTTCTTTGTCAAACAATTCTCTCAACACAGTAAGTAAGAGACCATCAATGTCCACTGGTACTGGTCATGTTTCATCTAGGCCTTCCACCCCTACCTCAAGGTCTGTTGTTCCTTCATCAATGGCAGCAGTACCTGCATCAAGGTCGGCAGTGCCTGCATCAAGGCCAGCAGTGTCCGCATCAAGGCCAGTAGCACCTGCATCAAGACCAGCAGCACCTGCATCAAGGTCTTCATTGACTGCATCAAGGCCTTCTACCCCTACATCAAGACCTACAATTTCTGCATCAAGAGCTTCAGTGACTGCATCAAGGCCTTCTACTCCCACATCAAGGTCTACACTTCCTGCAACGAGGTCTACACTTCCTGTAACAAGGCCATCATCAAGACCTTCCACACCAACAAGGCGTCCATCAACTCCAAACCTCAACCAAAGTAATTCTGGTCCACCACCAGCCCGTTCTTCTTCTGTTGGAAAGTCAACCTCAATGCCTTCCAGGAATTCAGCTCCTTCACGAGGAAGTTCTCCTACTTTAAAATCACAACCTTGGCAACCAACAGCAATCCCTGGTTTTTCACTTGACGCACCTCCAAATTTAAGGACTACTATGCCAGAGCGACCTCCTTCAGCTACGAGAGGTAGACCTGGAGCTCCAAGTGCTGCACGATCTGCTAATGAGGCACCCATTGCAAGTAGCAGGCCAAGAAGACAGTCATGCTCTCCAAGTGTCACAAGGGGAAGAATTTCAAATGATAGCCAGAACAGTGACCGGTCCAGTGTACAATCTAGCAAATCACATAGTATTGGTAATAACATTGCAGTGTCAGGTGTAATTGGCAGCAAGATGGTTGAAAAGGTGTTGAATGCAAGAAGAGCTGCTCCAAAACAGCAGGAAGATCAATCATCTGTGAGGTCTATCTCATCTACAACACAAGCTAAACGGCCAGTGAAGCCAGTATTATCTCCAGATAGCACAGGCTTTGGAAGGACGCTCTCAAAAAAATCTTTGGATATGGCTTTAAGACACATGGATATACGGCGAAGTACACCCAATAGCTTGCGTCCCTTGATGACCAACATTCCAACATCATCTCTATACAGTGTCCGATCAGGTGCTCCTAGAAGCAGGGCAACTAGTATATCTGACTCTCCAGTGGCGACAAGCAGCAATGCCAGTTCAGAGCATAGTGCAAGCATTGCTCTAGGTCCAGAAGGGAGTGAATTGGATGATGATGATTTTGGAAGTGAGAGGGGTAGTAGAACCTCCCCAACAAGTCAGCAAGGTAGCATTCTTTCCAAGGGAGATCTAGGGAGCACAAACTGGCTGCACAGTCCAGAATTTCGAGATGATAAGTATGATCAGGCGTTCTTGTACAACCGAGGATTTGAACAATTATTGGATCCATTGGAAGGTCCTGTAAGTGCAACAAGTGGTAGCACAGATTGTGAAAGTAAAATCAGATTAGAATACTGA___CCTAAGAGACCCTACATATTGTTACACCTTCAGAGCTTGGTGGACTTAATGTATCGTGGTGACTCATTAAAGGACGGTCTTATTACCAGAAATTCTTCAGAGACTAATCATTAATGTACAACCTACTACAGTTTTTGCAAAAGCACAATCCAGAAGTAGCCAGTACTGTTTCAAAATGTTAGTTTTGTGCCTGCTGATTCAGTATTGCAGAAATCCAAGTATATAAAATTAGGATTAAATGTCAGAGACGTGTAATATCAGCCAATTGCTGGAATTAAATTAGGTTGGAATGAGCAGTCATTATGTTGGATGATGATGAACTAGGTCTTTGATTTTCATGAACTAGTCCGGCGATTGAATTAAATGGGTGGAAAATGAAGCACCATAGCAGGAGTTGGTTGTTTTAAATGCTTCTGGTTTCATTGGAAATCTGCTTTGGAGTTCATCTTGCAATGAA

Fln Alignment:

sp_v1.1_unigene11494___KEKDDDLALFHEMRKREKERNTLLLLPNSDEFEPPLATVKPSSSPIYKITPSTPLPKSRADDLLNADGDKNDYDWLLTPPGTPLFTSLEMEIPAIPMDQRGTPVLKPPPNLKSSRLLNPGLEPTSKIVRNNFPSRQTAXXXXXXXXXTVSKRPSMSTGTG
B9HHM7_______________KEKEEELALFLEMKKREKEQNNLFLINNTEDFEAPFGS-RHGTSPIFNISSSTPARKTGADDFLNSENDKHDYDWLLTPPGTPLFPSLEVESQKTIMSQIGTP--KACPTALKSRLASPQPDP---VRRGNLVSKQPASSPGLNSSGAAMRRPSSSGGPG

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
534	83		16		0.994512
535	83			16	0.994512
540	80			20	0.995493
543	80			20	0.995493
551		80		20	0.995493
629		12		87	0.992554
633		12		87	0.992554
634	87		12		0.992554
644			12	87	0.992554
650	87			12	0.992554
652	12	87			0.992554
657			87	12	0.992554
658		12	87		0.992554
659			12	87	0.992554
663		87	12		0.992554
664		87		12	0.992554
665			12	87	0.992554
666	12	87			0.992554
667			12	87	0.992554
669			12	87	0.992554
670	12			87	0.992554
671		12		87	0.992554
673		87	12		0.992554
674			12	87	0.992554
675		12		87	0.992554
678		12		87	0.992554
680		12	87		0.992554
2067	80		20		0.995493
2102	20	80			0.995493
2103		80		20	0.995493
2104	80		20		0.995493
2105	80		20		0.995493
2106		80	20		0.995493
2208	86		13		0.999973
2354		10		89	0.999919
2486	12		87		0.992554
2740		33		66	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
370	381	GCA GCA GCA GCA	12
2054	2065	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain