SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11492

Length: 562 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11492
CGTCGCTTTCTCAAGAGATCAAGCACAGAAGGTCTATGTACAGCACAAGATACAGGAGGAAGGCATTAAGGTGTGGAATTTTTTGAAATCAGGTGCCTGGGTGTATGTTGCTGGTTCTGCTACAAAAATGCCTGCAGATGTAATGTCAACCCTAGAAGAAGTCATATCAAGTGAAGGAGGCTTCTCAAAAGAATCAGCTTCCAGATGGCTCAAACAATTGGAAAAAATCGGCAGGTATCATGTTGAAGCTTGGTCATAAAGAGGGTATTCATTCCATTTGCAAAATGAATATGAGAGAAGAGGAAGATTGAAAGAAAGAAAAATGGCATACTCCTAGTCGAAGTTGTCACGTAATGTGTAACCATATTTTCCTGTTGTAATAGAGGAAATAGGGATTTATAATTGGTAGACATGGTTTGTAGTTTATGATCTTTTTATGTAAGGATGTCCTTCTTTAATTCAATTTTCTTCTGTTTCTTTTCTAAATATTTAGGGCGGCTAAAAGCAAGTTAGCCATTTACAATTCCATATGTTACACCATATAAAAGGATCACAATACAAG

Ace file of the UniGene sp_v1.1_unigene11492

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATR3; nadph-cytochrome P450 oxydoreductase	-	-	8.0e-26	67%
FL-Next	sp=NADPH--cytochrome P450 reductase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	40%
Blast2go	nadph-cytochrome p450 oxydoreductase	-	-	1.5953e-25	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADPH--hemoprotein reductase.	EC:1.6.2.4	-	1.5953e-25	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	1.5953e-25	76%
Blast2go	iron ion binding	GO:0005506	Molecular Function	1.5953e-25	76%
Blast2go	NADPH-hemoprotein reductase activity	GO:0003958	Molecular Function	1.5953e-25	76%
Blast2go	FMN binding	GO:0010181	Molecular Function	1.5953e-25	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40916

Fln msg: your sequence is shorter than subject: 86 - 719

Fln protein: VAFSRDQAQKVYVQHKIQEEGIKVWNFLKSGAWVYVAGSATKMPADVMSTLEEVISSEGGFSKESASRWLKQLEKIGRYHVEAWS*

Protein Length: 87

Fln nts: CGTCGCTTTCTCAAGAGATCAAGCACAGAAGGTCTATGTACAGCACAAGATACAGGAGGAAGGCATTAAGGTGTGGAATTTTTTGAAATCAGGTGCCTGGGTGTATGTTGCTGGTTCTGCTACAAAAATGCCTGCAGATGTAATGTCAACCCTAGAAGAAGTCATATCAAGTGAAGGAGGCTTCTCAAAAGAATCAGCTTCCAGATGGCTCAAACAATTGGAAAAAATCGGCAGGTATCATGTTGAAGCTTGGTCATAA___AGAGGGTATTCATTCCATTTGCAAAATGAATATGAGAGAAGAGGAAGATTGAAAGAAAGAAAAATGGCATACTCCTAGTCGAAGTTGTCACGTAATGTGTAACCATATTTTCCTGTTGTAATAGAGGAAATAGGGATTTATAATTGGTAGACATGGTTTGTAGTTTATGATCTTTTTATGTAAGGATGTCCTTCTTTAATTCAATTTTCTTCTGTTTCTTTTCTAAATATTTAGGGCGGCTAAAAGCAAGTTAGCCATTTACAATTCCATATGTTACACCATATAAAAGGATCACAATACAAG

Fln Alignment:

sp_v1.1_unigene11492___VAFSRDQAQKVYVQHKIQEEGIKVWNFLKSGAWVYVAGSATKMPADVMSTLEEVISSEGGFSKESASRWLKQLEKIGRYHVEAW
Q40916_______________LAFSREGATKEYVQHKITEKGSYIWNLIAQGGYLYVCGDAKGMARDVHRTLHSIVQEQESVDSTSAEATVKKLQTEGRYLRDVW

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
32	20		80		0.995493
47	83			16	0.994512
48	83	16			0.994512
50	83			16	0.994512
51			16	83	0.994512
55		16	83		0.994512
56			83	16	0.994512
57	85			14	0.993533
60	71	14	14		0.984337
61	71		14	14	0.984337
63			85	14	0.993533
66		14		85	0.993533
68	85	14			0.993533
179	14		85		0.993533
229		57		42	1.0
290		37		62	1.0
309		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain