SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11478

Length: 853 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11478

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP-binding protein yptv3, putative n=1 Tax=Ricinus communis RepID=B9T5U9_RICCO	-	-	2.0e-37	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	member of ras oncogene family-like 3	-	-	3.0746e-37	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Heterotrimeric G-protein GTPase.	EC:3.6.5.1	-	3.0746e-37	82%
Blast2go	Small monomeric GTPase.	EC:3.6.5.2	-	3.0746e-37	82%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	3.0746e-37	82%
Blast2go	Signal-recognition-particle GTPase.	EC:3.6.5.4	-	3.0746e-37	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	3.0746e-37	82%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	3.0746e-37	82%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	3.0746e-37	82%
Blast2go	circadian regulation of gene expression	GO:0032922	Biological Process	3.0746e-37	82%
Blast2go		GO:0009105	Biological Process	3.0746e-37	82%
Blast2go	glycine catabolic process	GO:0006546	Biological Process	3.0746e-37	82%
Blast2go		GO:0017140	Molecular Function	3.0746e-37	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	3.0746e-37	82%
Blast2go	GTPase activity	GO:0003924	Molecular Function	3.0746e-37	82%
Blast2go	transcription factor binding	GO:0008134	Molecular Function	3.0746e-37	82%
Blast2go	GTP binding	GO:0005525	Molecular Function	3.0746e-37	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	3.0746e-37	82%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	3.0746e-37	82%
Blast2go	nucleus	GO:0005634	Cellular Component	3.0746e-37	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	3.0746e-37	82%
Blast2go	RNA polymerase sigma factor 54, interaction	IPR002078	-	3.0746e-37	82%
Blast2go	Ras	IPR013753	-	3.0746e-37	82%
Blast2go	Small GTPase	IPR020851	-	3.0746e-37	82%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
645		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
456	473	ATAGAG ATAGAG ATAGAG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain