SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11454

Length: 458 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene11454
ACCGTCGTGACCTTGGCTGTCACTCAAAACAGGGTACCCTCTTATCGACGCTAATATGAAGGAATTGTCTGCCACTGGCTTTATGTCAAACAGAGGGCGTCAAATTGTTTGTTCATTTTTGGTGCGGGATATGGGTTTGGACTGGAGGATGGGTGCAGAATGGTTTGAGACATGCTTGCTAGATTATGATCCATGCTCAAATTATGGGAATTGGACATATGGTGCAGGTGTTGGCAATGATCCAAGGGAGGACAGATACTTTAGTATCCCAAAACAGGCACAAAATTATGATCCCGATGGAAAATATGTTGCACACTGGTTACCAGACATTGCAAAACTACCAAGAGAAATGCGTCATTTTCCAGGAAAGGTTTATATTACACCAGTAGTTCCTTTGAAATTTGCTAATACTGGGCGTACTTATGGTCAGGCTACAGGACATCCAGAAAATATAGGCT

Ace file of the UniGene sp_v1.1_unigene11454

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA photolyase, putative n=1 Tax=Ricinus communis RepID=B9SPQ6_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	cryptochrome dash	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Deoxyribodipyrimidine photo-lyase.	EC:4.1.99.3	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	protein-chromophore linkage	GO:0018298	Biological Process	86%
Blast2go	DNA repair	GO:0006281	Biological Process	86%
Blast2go	DNA binding	GO:0003677	Molecular Function	86%
Blast2go	deoxyribodipyrimidine photo-lyase activity	GO:0003904	Molecular Function	86%
Blast2go	FMN binding	GO:0010181	Molecular Function	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cryptochrome/DNA photolyase, class 1	IPR002081	-	0.0	86%
Blast2go	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPX1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 181 aas, your sequence is shorter than subject: 152 - 655

Fln protein: PS*PWLSLKTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPDGKYVAHWLPDIAKLPREMRHFPGKVYITPVVPLKFANTGRTYGQATGHPENIG

Protein Length: 153

Fln nts: ACCGTCGTGACCTTGGCTGTCACTCAAAACAGGGTACCCTCTTATCGACGCTAATATGAAGGAATTGTCTGCCACTGGCTTTATGTCAAACAGAGGGCGTCAAATTGTTTGTTCATTTTTGGTGCGGGATATGGGTTTGGACTGGAGGATGGGTGCAGAATGGTTTGAGACATGCTTGCTAGATTATGATCCATGCTCAAATTATGGGAATTGGACATATGGTGCAGGTGTTGGCAATGATCCAAGGGAGGACAGATACTTTAGTATCCCAAAACAGGCACAAAATTATGATCCCGATGGAAAATATGTTGCACACTGGTTACCAGACATTGCAAAACTACCAAGAGAAATGCGTCATTTTCCAGGAAAGGTTTATATTACACCAGTAGTTCCTTTGAAATTTGCTAATACTGGGCGTACTTATGGTCAGGCTACAGGACATCCAGAAAATATAGGCT

Fln Alignment:

sp_v1.1_unigene11454___WLSLKTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPDGKYVAHWLPDIAKLPREMRHFP
B8LPX1_______________WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
3		66		33	0.997452
4	33		66		0.997452
6		66		33	0.997452
7			66	33	0.997452
8		33		66	0.997452
9	33		66		0.997452
12		66		33	0.997452
20	33			66	0.997452
21		66	33		0.997452
23		66		33	0.997452
24			33	66	0.997452
25		66	33		0.997452
440	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain