SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11413

Length: 870 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11413

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chitinase 1 n=1 Tax=Tulipa bakeri RepID=CHIT1_TULBA	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	chitinase 1	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chitinase.	EC:3.2.1.14	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	chitin catabolic process	GO:0006032	Biological Process	76%
Blast2go	chitinase activity	GO:0004568	Molecular Function	76%
Blast2go	cation binding	GO:0043169	Molecular Function	76%
Blast2go	chitin binding	GO:0008061	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Blast2go	2S globulin	IPR000677	-	76%
Blast2go	Glycoside hydrolase, family 18, catalytic domain	IPR001223	-	76%
Blast2go	Glycoside hydrolase, chitinase active site	IPR001579	-	76%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	76%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	76%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
332	20		80		0.995493
351	80	20			0.995493
653		66	33		1.0
675	83		16		0.994512
676	16			83	0.994512
678		16	83		0.994512
679	83			16	0.994512
682	16	83			0.994512
686			83	16	0.994512
756	33		66		0.997452
757		66	33		0.997452
759	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain