SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11411

Length: 1950 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11411
CGTCGTGACCTTGGCTGTCACTCAGTTCGGATTTGTAGATTTCAGACTGAATAATGGAGGAGTTGAAGCGCTGCGCTGCGAATTACCCGCCTCTGTCCCCAATTCGCTTCATTGAGAGAGCTGCTATTGTCTATGGAGACTCCACCTCCCTCGTCTATAATTCAACTTATTTCTCATGGTCTCACACCTATGAACGCTGTCGCAGGCTCGCCTCTGCACTGTCTGCTCGCAATATCTCGCCAGGTGATGTTGTCTCTGTGGTGGCTCCCAACATTCCTGCAATTTATGAAATGCATTTCGCAGTTCCAATGGCAGGGGCCGTTCTCAACACCGTCAACACGCGTCTGGATGCTCGAACTATGGCTGCTCAATTCAATCACTGTCAACCCAAGATTGTGTTTGCGGATTACCAATTGCTGCCTGTGGTCACGGAAGCTCTAGGCGGAACCAACCATAAACCCACCCTGGTACTCATCCCGGAGCTCGTCAATGGCACAGAAATAGTTCCCAAGAGTACAGCAACAGCCACAACATACGAAGGATTATTGCAAGCAGGAGATCCAGAGTTCGAAACACGGTGGCCAGAGGATGAATGGCAGTCCATTGTTGTGAATTATACATCGGGCACAACCTCTGCTCCTAAAGGAGTAGTTCAGAGCCACAGAGGCATCTACACAATGGCTTTGGATGCTCTTTTAACATGGGGTATGAAGTCACAGCCAGTTTATCTGTGGACTCTGCCCATGTTTCACGCCAACGGTTGGAGTTTTCCTTGGGGAATTGCTGCCCTCGGCGGCACAAATATCTGCCTCAGGAAATTCGATGCTAACATCGTCTACAAAGCTCTCAGTGACCACCGGGTTACCCATCTTTGCGGGGCGCCTGTGGTGCTTTCCATGATCGCAAACGCGGATCCATCCGAAAGAAAACCTTTACCCTGTCGGGTAGAAATCTTGACCGCCGGGTCTCCTCCACCAGCTGCTGTACTGCTGAAAATTGAAGAGCTGGGGTTCTCTGTTACTCATGGCTATGGCCTCACAGAGACGGGAGGACTGGTGGTTACCTGCGCTTGGAAAACTGGGTGGAACAAGCTTCCGGCTGAGGAGAGGGCTAAACTCAAAGCCAGACAGGGCGTTAGAGGGCTTGGCTTGGCGGAATTGGACGTAAAAGATCCAGATACCATGGGTAGAGTGCCAAGAGACGGAGTGAAGATGGGCGAGGTTATGATGAGAGGGCCGAGCGTTTTGAAGGGATATCTCAAGGACGAGAGGAACACTGCTAAAGCCATGGAAGGTGGGTGGTTCCACACAGGGGACGTGGGAGTAATCCACCCGGATGGTTACCTGGAAATAAAGGATCGTTCCAAAGACATTATAATCTCAGGGGGAGAGAACATCAGCAGCGTGGAGGTGGAGTCGGTGTTGTATTCCCATCCTATGACCGTGGAGGCAGCTGTTGTGGCAAGGCCTGATCCTTTCTGGGGAGAGACTCCATGTGCATTTGTGAGTACCAGAGGAGGGCCAAGCAATCCTAATGTTTCGAGGGTAAGGATAACAGAGGCGGATATGATTTCATTCTGCAGAGAGCGGCTGCCTCACTACATGGTTCCCAAAACTGTGGTGTTCATGGAGTCGCTGCCAAAGACTTCCACGGGTAAAACTCAGAAGTACGTTCTCAGGGAAATGGCAAAAAAGCTACCACGAACGGACCATCAATCTGAGAAAATAGGCAGCTTAAGCAGACTGTGAGCAAAACTCTCACATGGGCTTTCTTTCCAGTAATCATATATTTTATTCAGTTGTGTTGATTTAAACCTGGCATAGAATGGCCGGACTGTATAGTTAAGTTTCTTAGATAGATTTGAATTGTTTACTGTAGATTGGAGCCAATAGTTGGGTCAGTGAGTAAGTAATAAGTGCAATATCCAGCTCTGTATTTACTGTCTTTTGG

Ace file of the UniGene sp_v1.1_unigene11411

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AMP dependent ligase, putative n=1 Tax=Ricinus communis RepID=B9S6X4_RICCO	-	-	58%
FL-Next	tr=AMP dependent ligase, putative; Ricinus communis (Castor bean).	-	-	58%
Blast2go	acyl:coa ligase acetate-coa synthetase-like protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	ligase activity	GO:0016874	Molecular Function	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AMP-dependent synthetase/ligase	IPR000873	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S6X4

Fln msg:

Fln protein: MEELKRCAANYPPLSPIRFIERAAIVYGDSTSLVYNSTYFSWSHTYERCRRLASALSARNISPGDVVSVVAPNIPAIYEMHFAVPMAGAVLNTVNTRLDARTMAAQFNHCQPKIVFADYQLLPVVTEALGGTNHKPTLVLIPELVNGTEIVPKSTATATTYEGLLQAGDPEFETRWPEDEWQSIVVNYTSGTTSAPKGVVQSHRGIYTMALDALLTWGMKSQPVYLWTLPMFHANGWSFPWGIAALGGTNICLRKFDANIVYKALSDHRVTHLCGAPVVLSMIANADPSERKPLPCRVEILTAGSPPPAAVLLKIEELGFSVTHGYGLTETGGLVVTCAWKTGWNKLPAEERAKLKARQGVRGLGLAELDVKDPDTMGRVPRDGVKMGEVMMRGPSVLKGYLKDERNTAKAMEGGWFHTGDVGVIHPDGYLEIKDRSKDIIISGGENISSVEVESVLYSHPMTVEAAVVARPDPFWGETPCAFVSTRGGPSNPNVSRVRITEADMISFCRERLPHYMVPKTVVFMESLPKTSTGKTQKYVLREMAKKLPRTDHQSEKIGSLSRL*

Protein Length: 566

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCGGATTTGTAGATTTCAGACTGAATA_-_ATGGAGGAGTTGAAGCGCTGCGCTGCGAATTACCCGCCTCTGTCCCCAATTCGCTTCATTGAGAGAGCTGCTATTGTCTATGGAGACTCCACCTCCCTCGTCTATAATTCAACTTATTTCTCATGGTCTCACACCTATGAACGCTGTCGCAGGCTCGCCTCTGCACTGTCTGCTCGCAATATCTCGCCAGGTGATGTTGTCTCTGTGGTGGCTCCCAACATTCCTGCAATTTATGAAATGCATTTCGCAGTTCCAATGGCAGGGGCCGTTCTCAACACCGTCAACACGCGTCTGGATGCTCGAACTATGGCTGCTCAATTCAATCACTGTCAACCCAAGATTGTGTTTGCGGATTACCAATTGCTGCCTGTGGTCACGGAAGCTCTAGGCGGAACCAACCATAAACCCACCCTGGTACTCATCCCGGAGCTCGTCAATGGCACAGAAATAGTTCCCAAGAGTACAGCAACAGCCACAACATACGAAGGATTATTGCAAGCAGGAGATCCAGAGTTCGAAACACGGTGGCCAGAGGATGAATGGCAGTCCATTGTTGTGAATTATACATCGGGCACAACCTCTGCTCCTAAAGGAGTAGTTCAGAGCCACAGAGGCATCTACACAATGGCTTTGGATGCTCTTTTAACATGGGGTATGAAGTCACAGCCAGTTTATCTGTGGACTCTGCCCATGTTTCACGCCAACGGTTGGAGTTTTCCTTGGGGAATTGCTGCCCTCGGCGGCACAAATATCTGCCTCAGGAAATTCGATGCTAACATCGTCTACAAAGCTCTCAGTGACCACCGGGTTACCCATCTTTGCGGGGCGCCTGTGGTGCTTTCCATGATCGCAAACGCGGATCCATCCGAAAGAAAACCTTTACCCTGTCGGGTAGAAATCTTGACCGCCGGGTCTCCTCCACCAGCTGCTGTACTGCTGAAAATTGAAGAGCTGGGGTTCTCTGTTACTCATGGCTATGGCCTCACAGAGACGGGAGGACTGGTGGTTACCTGCGCTTGGAAAACTGGGTGGAACAAGCTTCCGGCTGAGGAGAGGGCTAAACTCAAAGCCAGACAGGGCGTTAGAGGGCTTGGCTTGGCGGAATTGGACGTAAAAGATCCAGATACCATGGGTAGAGTGCCAAGAGACGGAGTGAAGATGGGCGAGGTTATGATGAGAGGGCCGAGCGTTTTGAAGGGATATCTCAAGGACGAGAGGAACACTGCTAAAGCCATGGAAGGTGGGTGGTTCCACACAGGGGACGTGGGAGTAATCCACCCGGATGGTTACCTGGAAATAAAGGATCGTTCCAAAGACATTATAATCTCAGGGGGAGAGAACATCAGCAGCGTGGAGGTGGAGTCGGTGTTGTATTCCCATCCTATGACCGTGGAGGCAGCTGTTGTGGCAAGGCCTGATCCTTTCTGGGGAGAGACTCCATGTGCATTTGTGAGTACCAGAGGAGGGCCAAGCAATCCTAATGTTTCGAGGGTAAGGATAACAGAGGCGGATATGATTTCATTCTGCAGAGAGCGGCTGCCTCACTACATGGTTCCCAAAACTGTGGTGTTCATGGAGTCGCTGCCAAAGACTTCCACGGGTAAAACTCAGAAGTACGTTCTCAGGGAAATGGCAAAAAAGCTACCACGAACGGACCATCAATCTGAGAAAATAGGCAGCTTAAGCAGACTGTGA___GCAAAACTCTCACATGGGCTTTCTTTCCAGTAATCATATATTTTATTCAGTTGTGTTGATTTAAACCTGGCATAGAATGGCCGGACTGTATAGTTAAGTTTCTTAGATAGATTTGAATTGTTTACTGTAGATTGGAGCCAATAGTTGGGTCAGTGAGTAAGTAATAAGTGCAATATCCAGCTCTGTATTTACTGTCTTTTGG

Fln Alignment:

sp_v1.1_unigene11411___MEELKRCAANYPPLSPIRFIERAAIVYGDSTSLVYNSTYFSWSHTYERCXXXXXXXXXXNISPGDVVSVVAPNIPAIYEMHFAVPMAGAVLNTVNTRLDARTMAAQFNHCQPKIVFADYQLLPVVTEALG---GTNHKPTLVLIPELVNGTEIVPKSTATAT--------TYEGLLQAGDPEFETRWPEDEWQSIVVNYTSGTTSAPKGVVQSHRGIYTMALDALLTWGMKSQPVYLWTLPMFHANGWSFPWGIAALGGTNICLRKFDANIVYKALSDHRVTHLCGAPVVLSMIANADPSERKPLPCRVEILTAGSPPPAAVLLKIEELGFSVTHGYGLTETGGLVVTCAWKTGWNKLPAEERAKLKARQGVRGLGLAELDVKDPDTMGRVPRDGVKMGEVMMRGPSVLKGYLKDERNTAKAM-EGGWFHTGDVGVIHPDGYLEIKDRSKDIIISGGENISSVEVESVLYSHPMTVEAAVVARPDPFWGETPCAFVSTRGGPSNPNVSRVRITEADMISFCRERLPHYMVPKTVVFMESLPKTSTGKTQKYVLREMAKKL
B9S6X4_______________MDHLKPKPANSFPLTPLSFLERASTVYGDCPSIVYNTATYTWSQTHRRCLQLASSLSSGGFTRGDVVSVVAPNTPPMYELQFAVPMSGAVLNNINTRLDARTVSVLLRHSQSKLVFVDCLSRDLVLEAVSLFPSSVKRPTLVLITD----DDEAPASSSTSSSSTVDFCCTYESMVEKGDPEFKWVQPQSEWDPMILNYTSGTTSSPKGVVHCHRGIYIITVESLIDWNVPRQPVYLWTLPLFHANGWSFPWGMAAVGGTNICIRKFDASSIYGLIKRHGVTHMCGAPVVLNMLTNSPDNE--PLKRPVHILTAGAPPPAAVLFRTESLGFVVSHGYGLTETAGLVVSCAWKPKWNTVPASERARLKARQGVRIAGFTEIDVIDPKTGLSVKRDGLSLGEIVLRGGCVMMGYLKDPDGTSKCLKDDGWFYTGDVGVMHPDGYLEIKDRSKDVIISGGENISSVEVESVLYSNPVVNEAAVVARPDEYWGETPCAFVSLRDG------AREKVSEKDIIEYCREKMPHYMVPKTVVFKEELPKTSTGKIQKFVLRDIAKAM

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
195	33	66			0.997452
221		33	66		0.997452
467		80		20	0.995493
469		20	80		0.995493
471		20		80	0.995493
473		80	20		0.995493
475		80	20		0.995493
477			20	80	0.995493
498		80	20		0.995493
555	20	80			0.995493
570		20		80	0.995493
575	80			20	0.995493
622	83			16	0.994512
658		20	80		0.995493
671	80		20		0.995493
685	16			83	0.994512
724	66		33		0.997452
795			66	33	0.997452
798			66	33	0.997452
799		66	33		0.997452
803	66	33			0.997452
804	66			33	0.997452
806	66		33		0.997452
807			33	66	0.997452
817		33	66		0.997452
818	66			33	0.997452
819	66	33			0.997452
896		33		66	0.997452
1195		25		75	0.996473
1204	75		25		0.996473
1314	40		60		1.0
1398	71		28		1.0
1401	71		28		1.0
1402			71	28	1.0
1403		75	25		1.0
1404	87		12		0.992554
1405		25	62	12	1.0
1407			75	25	1.0
1410	12		87		0.992554
1411	62	37			1.0
1412		12	62	25	1.0
1413			87	12	0.992554
1416		25	75		1.0
1417	87			12	0.992554
1418		25	75		1.0
1422			87	12	0.992554
1423		12	87		0.992554
1424	12			87	0.992554
1520			87	12	0.992554
1668	33		66		1.0
1677		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain