SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11409

Length: 1049 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11409

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SS80_RICCO	-	-	2.0e-29	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	serine-threonine protein plant-	-	-	2.9214e-29	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	2.9214e-29	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA methylation	GO:0006306	Biological Process	2.9214e-29	62%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	2.9214e-29	62%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	2.9214e-29	62%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.9214e-29	62%
Blast2go	ATP binding	GO:0005524	Molecular Function	2.9214e-29	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	2.9214e-29	62%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	2.9214e-29	62%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 244 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 226 - 551

Fln protein: GDCSGSPSFPSPCRLPLSLCLRSFSSSFPFPSAHSFHDDAQSLLAFKKLITSDPNNSLASWSPTVPLCNWTAITCGRHHPDRVVAIDLDSMDLRGTISPSLGNLSFLRSLNISDNELHGHIPPQLGRLFRLRWLWLYNNQLEGNIPHQLSSCRNLVSLALSYNNLSGNIPGELSSLSHLQELYLGANSLTDFCRFKDGALIPRQSQELRTISLFSKKFQIWGRTL*

Protein Length: 227

Fln nts: GGGGACTGCAGCGGAAGCCCTTCATTTCCATCGCCATGCCGTCTCCCTCTTTCGCTTTGCCTGCGCTCTTTCTCCTCTTCCTTTCCTTTCCCCTCTGCGCATTCATTTCATGATGATGCACAGTCCCTGTTGGCATTTAAAAAGCTCATTACGAGCGATCCCAATAATTCATTGGCCAGTTGGAGCCCCACAGTGCCCCTTTGCAACTGGACTGCTATTACTTGCGGCCGCCATCATCCAGACAGAGTTGTGGCCATCGATCTCGATAGCATGGATCTACGCGGCACCATCTCCCCTTCCCTTGGCAATTTGTCGTTCCTACGCTCACTCAATATTTCAGACAATGAGCTCCACGGTCATATCCCACCTCAATTGGGACGCCTCTTTCGTTTGAGGTGGCTCTGGCTATACAACAATCAATTGGAAGGAAATATACCACATCAACTCAGCAGCTGCAGAAATTTGGTTTCGCTGGCGCTCTCTTACAACAATCTGAGCGGAAATATCCCCGGGGAGTTGTCTTCCCTGTCACATTTGCAAGAGCTTTACTTGGGAGCAAACAGTCTAACAGATTTTTGCAGGTTTAAAGATGGAGCTTTAATCCCAAGACAGTCCCAGGAGCTTCGAACAATTAGTCTTTTCTCAAAGAAATTTCAAATTTGGGGACGTACTCTCTGAAATGGAAAAAGGCGTACTCTTTCATCGATCATGATCAGTGACTTCTATACATTATGGCAGACGGTTTTTCCTAATAATTATGCAGACTTTTTCATCGATTATGTACTCTTTCAGCTCTTCTCAATGGACGTTTTTCAATGCTCTGAAATGGAAAGTTGTGGGTTCATCATCTAAAGATGAGCTCCCAATAATGTAGAGGAGGCTCTGCTTTGGGTACAGGAAGGAAAACTATGTAATGACATTTTGTTTTACGTTCTGAATGGGTACCTCTCAATTCCAAATTTAATTATTTGACAGATTTTTTTATAAAATATTAAATGCTATGCTTTTTATTATTTGATTAATATAATTCATCAGTTGATTCCAGATTC

Fln Alignment:

sp_v1.1_unigene11409___LAFKKLITSDPNNSLASWSPTVPLCNWTAITCGRHHPDRVVAIDLDSMDLRGTISPSLGNLSFLRSLNISDNELHGHIPPQXXXXXXXXXXXXYNNQLEGNIPHQLSSCRNLVSLALSYN-NLSGNIPGELSSLSHLQELYLGANSLT
B8LRW5_______________MEFKATLSLDPNKALSGWNTSVSLCSWTGVQCSLRH-QRVVSLNLTGMGLQGPISPLLANLSFLRVLDLSNNSHHGYIPHDLGRLFRLRVLRLSRNRLECPIPSTICGCRLLKIISLSNNFLLNGSIPSELGLLRNLKFLWLGINKLT

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
794			50	50	1.0
816	66		33		0.997452
916			85	14	0.993533
917	71			28	1.0
964	80			20	0.995493
973		40	60		1.0
976	50		50		1.0
990	50	50			1.0
1035	33		66		0.997452
1044		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain