SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11400

Length: 3095 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11400
CGTGGCAATGCCAATTCCTCCCCTCGTTAGACGACGACTACCTCTTGACGTCGTTACCTTTTTTGTCTCTCATGTTAGTGGGATTTCTCAATATAAGCCGGAGCGTAAGCCGTGGCGATGATTCCCTCGACGAGCATAACTGTAAGGGTTTATTGTGGTTATAGCACTTATACTGCGTAAGGCCACTACGTAAGGCAAGAATAGAAGGCGGAAAGAAGAGGAGGGTTGGCCATGGGAAGCAGGATGAAACGCTGGGGATTATTGAATGTTGTGGCAGTCTTGGCTATTTACAGTTGGAATTTAGAAGTGGTTGAATGCGAGGCATTCAGACGTGATCCAGGGCACCCTCAGTGGCATCACAGCGCGTTCCAGGATATCCAGGAAAACATCAAGCATGAGATGCGCCAAATGCTGCACTCCAGAGCCGAGGTTGGGCAGCCAGAGCTTATAGCATTCGAACAGGCAGTGAAGAACGCGATGGTGCCTGCTGGTTCAGCAAGGGAGAGCGAATATGGAAGAGAGGTACCGTTGTTTGAAGTTGAAGCAATGACTGTAGAACCGACTTTCCAAAGTCTGTACACCTATTTGTTTGACTTTGAAGATGCTTCATATTCTGCTGCAGAAATAAAAGGACCTGTGCCAAATGCAATATTCATTCTAAACTTTGATAAGGTTCGGATGGATCCTAGGAACAGAGAAGTTGATCTTGAGGCTTTAAAGGAAGCGAAAATTGAAGAACTTACAGTTGAACAAATGAAGCAGCAGGAAGGAAATTATATTTACCGATATCGCTATGGTGAGGGGGGGCATCGCAAGTATGGTTGGGTTCAGGCAGATATGCTGTCATAGATCTGTCTGCTGGTCCATGCACGTATGGAAAGATAGAAACAGAGGAAGGTAGTGTAAGTTACAGGACGATTCCAAGGTTGTCGCATATTCTTTTTCCAAGAGGCCAGGGTCCTGTTAGTCCTGGTTCCACTGTTGAGCTCTTCACAGGACAGCTTGGAGCTCTCATTTCTACAACTATTGAACATGTTCTAGCTCCAGATGTCAGGTTTGAGACTGTTGATTTGGCCAGTCGGTTACTTGTTCCTATTATAGTGTTCCAAAACCATAATCATTACAATATTTTTGAAGCGGGCCACAACTATAGTATTGATATGAAGGCCATTGAGATGGAGGTTAAAAAGATGGTTCATGCTGGACAAGAGGTTGTTGTTGTTGGGGGTCCCCGCAGCCTTCATCGTCATGAGAAGTTAGCAATTGCTGTGTCAAAATCTCTACGCAGTCACTCTCTCCATGAGACAAATACAGATGGCCGTTTTCACGTCCGGACTAGAACATATCTAGATGGTTCTATTCTCAAAGAAGAAATGGAGCGTTCTGCAGATGTTCTGGCAGCTGGCTTGCTTGAAGCTGCAGATCCTTCTCTTTCAAGTACATTTTTCCTACGGCAGACGTGGATGTCAGAGTCAACTGATTCTGAGGATTCTGTTATAAAACCTAGACCTATTTGGGTAACTTACAGCTCCAAATATGGTAAGGATAAAAGACAGAAAGGGAAGCCAAAGAAGCAGCAAGATCTTTACAGGACATATGGCACCCGTGTAATTCCGGTGTTTGTGTTGTCTCTAGCTGGTATAGATCCTGAGCTATTGATGGAAGGTGAAAGTCAAGTATGGACCAGCAATGATGTTATAATTGTTCTTCAACATGAGAATAATCAAATACCCCTCAGTTATGTCTCAGAAACTGAGAGAAGATATGCTGTTCCACAGCTAACACAACGCCACATTTTAGCTGGATTAGCATCAGTTGTTGGTGGATTGGCTGCACCTTATGAAAAAGCTTCCCATATACATCATAGGCCAATTTCCAACTGGCTATGGGCAACTGGTTGTCATCCATTCGGTCCCTTCTCGAATGTCTCACAAATTAGCCAAATGCTTCGTGATACTGCATTGCGGAACACGATCTATGCACGCGTTGATGCAGCACTACATAAAATTCGTGACACAACAGAGGCAGTCCAGTCCTTTGCAAATGAACATTTGAAAACACCACTTGGGGAGCCAGTGAAAGGCCAACGGAAGAAGTCAACTGCAGAGTTGTGGCTTGATAAGTTCTACAAGAAGACAACCAGCTTACCAGAACCTTTCCCACATGAACTTGTTGAGCGCCTAGAACAATTTCTTGATAATCTGGAAGAGCAGTTTGTGGGTCTAGCTGGACTGTTGTATAACCATCTTTTGGATGATGCTCATAAGAATTCCTCCGAAATATTTCAAAATACAATGTTTACCCAGCAATATGTGCAGCGGGTGCTATTGAGTGAGCGGGACAAGATGAGATGTTGTACCGTGGAATATAAGGTTCCTGTACAGTCCTCTCAGGCATTTATATATGGTGGAATTTTAGTCTTTGGATTTATTGTTTACTTTCTGGTTATATTTTTCTCGTCACCTGAGCGCTGATGAACACTAGGGGCCCCTGTTCAACCTAAATACTTTTTAGAAAATAATGTGAAAAATGAAAACCCTTGTTCATCCTAAATGCAATACGAAACATTGTGTAAATAAAAACAATTTTGGTTGACATTGATCCCTTTCTCCTACCGAATGCATGTATTGGTCTACGTAAAAGTATTTAGAGTTGCAAACAGATATGTAGTCCTTGTTCTTCAAATGTAAGATTTGTCCAAGTTACGGAACACTCAATTTTGAAATACTAGTTATCTCGAGAGTTTTTTCATCTACTGTGATAAAAGGTAGCGTTGGCAGTTTAATAAGAATATATGGATATCACTTATATTATCCATATTCCAATTAGGGGTTTTGACAAATCCTCTTGGACACGGACGCGACCGTAGTTAAAATATCCTTTATAGACGGGAACATTTCTACATATATTTTTGCCCCTGGTTGGGCATTGCCTTTTTTTGGACTATGGCCTTTGTTAAGTTGGCATGCATTTGTCGTTGCACCTAACTGCTTTGGGACTGTAAGGGTTATAATAAGTTTTATTCTATCCTTTTACGTCTTCTATTAACTTTATGTGTCAACACAGTTGAAGCCTAAATGTATATGACATGTTTC

Ace file of the UniGene sp_v1.1_unigene11400

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	63%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SYJ8

Fln msg: Overlapping hits, possible frame ERROR between 807 and 801, your sequence is shorter than subject: 748 - 809

Fln protein: MGSRMKRWGLLNVVAVLAIYSWNLEVVECEAFRRDPGHPQWHHSAFQDIQENIKHEMRQMLHSRAEVGQPELIAFEQAVKNAMVPAGSARESEYGREVPLFEVEAMTVEPTFQSLYTYLFDFEDASYSAAEIKGPVPNAIFILNFDKVRMDPRNREVDLEALKEAKIEELTVEQMKQQEGNYIYRYRYGxxxxSQVWLGSGRYAVIDLSAGPCTYGKIETEEGSVSYRTIPRLSHILFPRGQGPVSPGSTVELFTGQLGALISTTIEHVLAPDVRFETVDLASRLLVPIIVFQNHNHYNIFEAGHNYSIDMKAIEMEVKKMVHAGQEVVVVGGPRSLHRHEKLAIAVSKSLRSHSLHETNTDGRFHVRTRTYLDGSILKEEMERSADVLAAGLLEAADPSLSSTFFLRQTWMSESTDSEDSVIKPRPIWVTYSSKYGKDKRQKGKPKKQQDLYRTYGTRVIPVFVLSLAGIDPELLMEGESQVWTSNDVIIVLQHENNQIPLSYVSETERRYAVPQLTQRHILAGLASVVGGLAAPYEKASHIHHRPISNWLWATGCHPFGPFSNVSQISQMLRDTALRNTIYARVDAALHKIRDTTEAVQSFANEHLKTPLGEPVKGQRKKSTAELWLDKFYKKTTSLPEPFPHELVERLEQFLDNLEEQFVGLAGLLYNHLLDDAHKNSSEIFQNTMFTQQYVQRVLLSERDKMRCCTVEYKVPVQSSQAFIYGGILVFGFIVYFLVIFFSSPER*

Protein Length: 749

Fln nts: CGTGGCAATGCCAATTCCTCCCCTCGTTAGACGACGACTACCTCTTGACGTCGTTACCTTTTTTGTCTCTCATGTTAGTGGGATTTCTCAATATAAGCCGGAGCGTAAGCCGTGGCGATGATTCCCTCGACGAGCATAACTGTAAGGGTTTATTGTGGTTATAGCACTTATACTGCGTAAGGCCACTACGTAAGGCAAGAATAGAAGGCGGAAAGAAGAGGAGGGTTGGCC_-_ATGGGAAGCAGGATGAAACGCTGGGGATTATTGAATGTTGTGGCAGTCTTGGCTATTTACAGTTGGAATTTAGAAGTGGTTGAATGCGAGGCATTCAGACGTGATCCAGGGCACCCTCAGTGGCATCACAGCGCGTTCCAGGATATCCAGGAAAACATCAAGCATGAGATGCGCCAAATGCTGCACTCCAGAGCCGAGGTTGGGCAGCCAGAGCTTATAGCATTCGAACAGGCAGTGAAGAACGCGATGGTGCCTGCTGGTTCAGCAAGGGAGAGCGAATATGGAAGAGAGGTACCGTTGTTTGAAGTTGAAGCAATGACTGTAGAACCGACTTTCCAAAGTCTGTACACCTATTTGTTTGACTTTGAAGATGCTTCATATTCTGCTGCAGAAATAAAAGGACCTGTGCCAAATGCAATATTCATTCTAAACTTTGATAAGGTTCGGATGGATCCTAGGAACAGAGAAGTTGATCTTGAGGCTTTAAAGGAAGCGAAAATTGAAGAACTTACAGTTGAACAAATGAAGCAGCAGGAAGGAAATTATATTTACCGATATCGCTATGGTxxxxxxxxxxxxTCGCAAGTATGGTTGGGTTCAGGCAGATATGCTGTCATAGATCTGTCTGCTGGTCCATGCACGTATGGAAAGATAGAAACAGAGGAAGGTAGTGTAAGTTACAGGACGATTCCAAGGTTGTCGCATATTCTTTTTCCAAGAGGCCAGGGTCCTGTTAGTCCTGGTTCCACTGTTGAGCTCTTCACAGGACAGCTTGGAGCTCTCATTTCTACAACTATTGAACATGTTCTAGCTCCAGATGTCAGGTTTGAGACTGTTGATTTGGCCAGTCGGTTACTTGTTCCTATTATAGTGTTCCAAAACCATAATCATTACAATATTTTTGAAGCGGGCCACAACTATAGTATTGATATGAAGGCCATTGAGATGGAGGTTAAAAAGATGGTTCATGCTGGACAAGAGGTTGTTGTTGTTGGGGGTCCCCGCAGCCTTCATCGTCATGAGAAGTTAGCAATTGCTGTGTCAAAATCTCTACGCAGTCACTCTCTCCATGAGACAAATACAGATGGCCGTTTTCACGTCCGGACTAGAACATATCTAGATGGTTCTATTCTCAAAGAAGAAATGGAGCGTTCTGCAGATGTTCTGGCAGCTGGCTTGCTTGAAGCTGCAGATCCTTCTCTTTCAAGTACATTTTTCCTACGGCAGACGTGGATGTCAGAGTCAACTGATTCTGAGGATTCTGTTATAAAACCTAGACCTATTTGGGTAACTTACAGCTCCAAATATGGTAAGGATAAAAGACAGAAAGGGAAGCCAAAGAAGCAGCAAGATCTTTACAGGACATATGGCACCCGTGTAATTCCGGTGTTTGTGTTGTCTCTAGCTGGTATAGATCCTGAGCTATTGATGGAAGGTGAAAGTCAAGTATGGACCAGCAATGATGTTATAATTGTTCTTCAACATGAGAATAATCAAATACCCCTCAGTTATGTCTCAGAAACTGAGAGAAGATATGCTGTTCCACAGCTAACACAACGCCACATTTTAGCTGGATTAGCATCAGTTGTTGGTGGATTGGCTGCACCTTATGAAAAAGCTTCCCATATACATCATAGGCCAATTTCCAACTGGCTATGGGCAACTGGTTGTCATCCATTCGGTCCCTTCTCGAATGTCTCACAAATTAGCCAAATGCTTCGTGATACTGCATTGCGGAACACGATCTATGCACGCGTTGATGCAGCACTACATAAAATTCGTGACACAACAGAGGCAGTCCAGTCCTTTGCAAATGAACATTTGAAAACACCACTTGGGGAGCCAGTGAAAGGCCAACGGAAGAAGTCAACTGCAGAGTTGTGGCTTGATAAGTTCTACAAGAAGACAACCAGCTTACCAGAACCTTTCCCACATGAACTTGTTGAGCGCCTAGAACAATTTCTTGATAATCTGGAAGAGCAGTTTGTGGGTCTAGCTGGACTGTTGTATAACCATCTTTTGGATGATGCTCATAAGAATTCCTCCGAAATATTTCAAAATACAATGTTTACCCAGCAATATGTGCAGCGGGTGCTATTGAGTGAGCGGGACAAGATGAGATGTTGTACCGTGGAATATAAGGTTCCTGTACAGTCCTCTCAGGCATTTATATATGGTGGAATTTTAGTCTTTGGATTTATTGTTTACTTTCTGGTTATATTTTTCTCGTCACCTGAGCGCTGA___TGAACACTAGGGGCCCCTGTTCAACCTAAATACTTTTTAGAAAATAATGTGAAAAATGAAAACCCTTGTTCATCCTAAATGCAATACGAAACATTGTGTAAATAAAAACAATTTTGGTTGACATTGATCCCTTTCTCCTACCGAATGCATGTATTGGTCTACGTAAAAGTATTTAGAGTTGCAAACAGATATGTAGTCCTTGTTCTTCAAATGTAAGATTTGTCCAAGTTACGGAACACTCAATTTTGAAATACTAGTTATCTCGAGAGTTTTTTCATCTACTGTGATAAAAGGTAGCGTTGGCAGTTTAATAAGAATATATGGATATCACTTATATTATCCATATTCCAATTAGGGGTTTTGACAAATCCTCTTGGACACGGACGCGACCGTAGTTAAAATATCCTTTATAGACGGGAACATTTCTACATATATTTTTGCCCCTGGTTGGGCATTGCCTTTTTTTGGACTATGGCCTTTGTTAAGTTGGCATGCATTTGTCGTTGCACCTAACTGCTTTGGGACTGTAAGGGTTATAATAAGTTTTATTCTATCCTTTTACGTCTTCTATTAACTTTATGTGTCAACACAGTTGAAGCCTAAATGTATATGACATGTTTC

Fln Alignment:

sp_v1.1_unigene11400___EAFRRDPGHPQWHHSAFQDIQENIKHEMRQMLHSRAxxASQVWLGSGRYAVIDLSAGPCTYGKIETEEGSVSYRTIPRLSHILFPRGQGPVSPGSTVELFTGQLGALISTTIEHVLAPDVRFETVDLASRLLVPIIVFQNHNHYNIFEAGHNYSIDMKAIEMEVKKMVHAGQEVVVVGGPRSLHRHEKLAIAVSKSLRSHSLHETNTDGRFHVRTRTYLDGSILKEEMERSADVLAAGLLEAADPSLSSTFFLRQTWMSESTDSEDSVIKPRPIWVTYSSXXXXXXXXXXXXXXXXXLYRTYGTRVIPVFVLSLAGIDPELLMEGESQVWTSNDVIIVLQHENNQIPLSYVSETERRYAVPQLTQRHIXXXXXXXXXXXXXPYEKASHIHHRPISNWLWATGCHPFGPFSNVSQISQMLRDTALRNTIYARVDAALHKIRDTTEAVQSFANEHLKTPLGEPVKGQRKKSTAELWLDKFYKKTTSLPEPFPHELVERLEQFLDNLEEQFVGLAGLLYNHLLDDAHKNSSEIFQNTMFTQQYVQRVLLSERDKMRCCTVEYKVPVQSSQAFIYGGILVFGFIVYFLVIFFSSPER
D7SYJ8_______________EAFRRDPGHPQWHHGAFHEVRDSVRSDVRRMLHTRAxxASQVWLGLGRFVVIDLSAGPCTYGKIETEEGSVSSKTLPRLRNVLFPRGFNAASVHSTHDTFVGQLAALVSTTVEHVIAPDVRFETVDLTKRLLIPIIVLQNHNRYNILDKGQNNSIDIEAIEAEVKKMVHYGQEVVIVGGSHALHRHEKLTIAVSKAMRGHSLQETKKDGRFHVHTKTYLDGAILKEEMERSADVLAAGLLEVADPSLSSKFYIRQHWMDESDGSGDSILKHKPLWATYASKRGKEKKKKTEKKQSD-LHRTYGTRVIPVFVLSLADVDPHLMMEDESLVWTSNDVVIVLQHQNEKIPLSYVSETERRHAIPSQAQRHILAGLASAVGGLSAPYEKASHVHERPIVNWLWSAGCHPFGPFSNTSQISQMLQDVALRNTIYARVDSALHRIRDTSEYVQTFAAEYLKTPLGEPVKGKKNKSSTELWLEKFYKKKTNLPEPLPHELVERLEKFLDNLEEELVDLSSLLYDHRLQDAHLNSSEILQSTIYTQQYVDYVLVSEKEKMKCCDIEYRFPVESSQTFIYGGILLAGFFVYFLVIFFSSPVR

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
79			66	33	0.997452
80			33	66	0.997452
111			75	25	0.996473
112	25	75			0.996473
114	25		75		0.996473
172		20		80	0.995493
173	80		20		0.995493
175	80	20			0.995493
176		80	20		0.995493
181		20	80		0.995493
183	80			20	0.995493
184	80		20		0.995493
189		80		20	0.995493
196		80	20		0.995493
259		60		40	1.0
284	50		50		1.0
515		20	80		0.995493
518			20	80	0.995493
519	80		20		0.995493
521			80	20	0.995493
522			80	20	0.995493
523	80	20			0.995493
1212	20		80		0.995493
1429		20		80	0.995493
2252	83		16		0.999991
2352	90			10	0.90298
2354	90	10			0.90298
2365	10			90	0.90298
2366		10		90	0.90298
2498			80	20	0.999996
2501	20	80			0.999996
2541	88		11		0.923564
2703	92	7			0.999999
2704			7	92	0.999999
2706		7		92	0.999999
2710		92	7		0.999999
2712	92	7			0.999999
2713		7	92		0.999999
2716	92		7		0.999999
2718			92	7	0.999999
2721	92			7	0.999999
2820		19		80	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1212	1224	GTT GTT GTT GTT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain