SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11388

Length: 1032 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11388

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Folate carrier protein, putative n=1 Tax=Ricinus communis RepID=B9S690_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	folic acid transport	GO:0015884	Biological Process	77%
Blast2go	transmembrane transport	GO:0055085	Biological Process	77%
Blast2go	binding	GO:0005488	Molecular Function	77%
Blast2go	folic acid transporter activity	GO:0008517	Molecular Function	77%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	77%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P061

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 228 - 301

Fln protein: S*PWLSLNFFFYSRAKHRYEKGTEEHLGPGLHLASAAEAGALVCLFTNPVWLVKTRLQIQTPGSGARQPYSGFLDALRTILRDEGWRALYKGLGPSLLLVSHGAIQFTTYEEARKFVITLRNKQRKDGNIVGDKALTSVDYAALGALSKTFAALLTYPYQVIRARVQQRPNSDGIPKYRDSYHAFKETLRFEGIRGLYKGIGPNLLKNVPASSITFLVYESLLRFLK*

Protein Length: 229

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTTTTTTTATAGCAGGGCAAAACATAGATACGAGAAAGGGACTGAGGAGCATTTGGGACCTGGCCTTCATCTCGCATCAGCTGCTGAAGCAGGTGCACTTGTATGTCTATTCACAAATCCTGTTTGGCTAGTCAAAACCAGGTTACAAATTCAAACACCAGGGAGTGGAGCTCGTCAGCCATATTCTGGTTTTCTTGATGCTCTGAGAACCATTCTGAGGGATGAGGGTTGGCGTGCGTTGTACAAAGGTCTTGGACCAAGCCTTTTGCTTGTTTCCCATGGAGCTATCCAATTCACAACATATGAGGAAGCTCGTAAGTTTGTCATAACATTGAGGAACAAGCAAAGAAAGGATGGCAATATTGTTGGAGATAAAGCATTGACTTCTGTGGACTATGCTGCTTTGGGAGCATTGTCAAAGACTTTTGCTGCATTGTTGACATATCCATATCAGGTGATCCGGGCACGTGTACAGCAAAGGCCAAATAGTGATGGTATACCAAAATATAGAGATAGCTATCATGCTTTTAAGGAAACATTAAGGTTTGAAGGGATTCGTGGACTCTACAAAGGCATTGGTCCAAATTTATTAAAGAATGTTCCAGCTTCATCCATCACATTTTTAGTTTATGAGAGTCTCCTCAGATTTCTAAAGTGA___TTGAACTCCCAAGGTGTTGGAGTTCAAACAGTAACCAATGTTAAATCTGCCCAAAAGGAAGCTTTTTACAGGATATGGATGTGTTATTCTACCACCTATTTGCATTAGATACACCAAACCTTTGTGTTATGAGAGTTTGATAGGATGCATTTCATGTGCTTCTCCCAAGGAAATATGTTATTTCAGTTGAAGTGAGCTCTTAGCAAAAGAAAAGCCTAGGAGAACCTAAAGTTGTTAGAATAACGGCCAACGTTTAGTAGTATGCGTAACCTCAAGGTTTTGTTGAAGAATGTAACTAGTGTCAGTCTTCATAATTATATTTGATGTAAGATGTATTGTATTTGTC

Fln Alignment:

sp_v1.1_unigene11388___LNFFFYSRAKHRYEKGTEEHLGPGLHLASAAEAGALVCLFTNPVWLVKTRLQIQTPGSGARQPYSGFLDALRTILRDEGWRALYKGLGPSLLLVSHGAIQFTTYEEARKFVITLRNKQRKDGNIVGDKALTSVDYAALGALSKTFAALLTYPYQVIRARVQQRPNSDGIPKYRDSYHAFKETLRFEGIRGLYKGIGPNLLKNVPASSITFLVYESLLRFL
A9P061_______________LYFFFYSRAKHRYQKGTEEHLGPGLHLASAAEAGALVCLFTNPVWLVKTRLQIQTPGSGARQPYSGFLDALRTILRDEGWRAFYKGLGPSLLLVSHGAIQFTTYEEARKFVITLRNKQRKDDNIVGDKALTSVDYAALGALSKFFAALLTYPYQVIRARVQQRPNTDGLPKYRDSYHAFKETLRFEGIRGLYKGIGPNLLKNVPASSITFLVYESVLRFL

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
45	25		75		0.996473
92		75		25	0.996473
267	25		75		0.996473
336	20		80		0.995493
403	80		20		0.995493
404	80		20		0.995493
556		16		83	0.994512
599	85	14			0.993533
600	85			14	0.993533
601		14	85		0.993533
602	14		85		0.993533
627		11		88	0.923564
630		11		88	0.923564
631		88	11		0.923564
632		88		11	0.923564
634		11	88		0.923564
638		88	11		0.923564
639	88		11		0.923564
641		88	11		0.923564
775		16		83	0.994512
871		75	25		0.996473
938		66		33	0.997452
952		66		33	0.997452
954		33		66	0.997452
957		66	33		0.997452
998	66		33		0.997452
999		33		66	0.997452
1001	66		33		0.997452
1003			33	66	0.997452
1005			33	66	0.997452
1008			33	66	0.997452
1009	33			66	0.997452
1010		33	66		0.997452
1012			33	66	0.997452
1014		33		66	0.997452
1015	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain