SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11383

Length: 841 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11383

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nucleoporin interacting component family protein	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	nucleoporin interacting component family protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	transferase activity	GO:0016740	Molecular Function	78%
Blast2go	nuclear pore	GO:0005643	Cellular Component	78%
Blast2go	nucleolus	GO:0005730	Cellular Component	78%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
615		20	80		1.0
616	80		20		1.0
618			20	80	1.0
624	86		13		0.999973
627	80			6	0.999961
628	80		6	13	0.999961
630	80	6			0.999961
631	6		80	13	0.999961
634	80	20			1.0
635	6		80	13	0.999961
636		13		86	0.999973
637	13			86	0.999973
661		66		33	1.0
671		11		88	0.923564
672			11	88	0.923564
676	88		11		0.923564
678			11	88	0.923564
679	11			88	0.923564
680		11	88		0.923564
681		11	88		0.923564
683			88	11	0.923564
684	88		11		0.923564
692		11		88	0.923564
693	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain