SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11382

Length: 1306 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene11382 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=B8LLU8_PICSI	-	-	51%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	beta-galactosidase 1 precursor	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	0.0	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLU8

Fln msg: your sequence is shorter than subject: 327 - 836

Fln protein: FVNGNLAGSQTGDYSKWGFTFEKPIALQAGENHIALLSMTVGLQNIGPFFDTWPTGINGPVKLLGLRNGPMDLSSQTWYYQIGLKGEYVQLYSDTGAKQIEWISGVNPPKQTALIWYKTEFNAPEGTNSVALDLSTMNKGQAWVNGNHIGRYFVSLKAPTDGCSNICDYRGTYYSSKCDTNCGEPTQKWYHVPRSWLHPTKNVLVLLEEVGGDPSGISFGTRYVDTVCAHVSQAHPTVSSLTLPELRLQCSSRQHISSISFASFGNPSGSCRNFIKGSCHAVNSTSIVEKACLGKEKCSISVSEDLFGISCADNLKSLAVEGVCKY*

Protein Length: 328

Fln nts: GTTTGTCAATGGCAATCTCGCAGGATCTCAGACTGGAGATTATTCGAAATGGGGGTTTACGTTTGAGAAGCCGATTGCACTGCAGGCTGGAGAGAATCATATTGCTCTACTAAGCATGACAGTTGGATTGCAGAACATTGGACCTTTCTTTGATACATGGCCGACGGGAATTAATGGTCCTGTGAAATTGCTGGGACTTAGAAATGGTCCAATGGATTTGAGCTCCCAAACTTGGTATTACCAGATAGGTCTGAAGGGTGAATACGTACAACTATATTCAGACACTGGAGCAAAGCAAATCGAATGGATTTCAGGAGTAAACCCTCCCAAACAAACTGCTCTCATCTGGTACAAGACAGAGTTTAACGCACCTGAAGGCACCAATTCAGTGGCCTTGGATCTAAGCACCATGAACAAAGGGCAAGCATGGGTAAATGGAAATCATATTGGGCGCTATTTTGTTTCATTGAAGGCTCCCACTGATGGCTGCTCTAATATATGCGATTACAGAGGCACTTACTACTCATCCAAATGTGACACGAACTGTGGAGAACCCACTCAAAAATGGTACCATGTTCCTCGCTCATGGCTGCACCCAACAAAGAATGTATTAGTTCTGCTCGAGGAAGTAGGCGGTGATCCTTCTGGAATTTCATTCGGGACAAGATACGTTGACACTGTCTGTGCCCATGTATCTCAAGCTCATCCTACTGTCAGCTCATTGACATTGCCAGAGCTTCGTCTCCAATGTTCTTCAAGGCAACACATATCATCCATAAGCTTTGCAAGCTTCGGAAATCCAAGTGGGTCCTGCAGAAATTTCATCAAGGGCTCTTGCCATGCAGTGAATTCAACTTCCATTGTAGAAAAGGCATGCCTTGGGAAGGAGAAATGTTCCATCTCTGTTTCCGAAGATTTGTTTGGAATCTCCTGTGCTGACAATCTCAAGTCTTTGGCAGTTGAGGGAGTTTGCAAATATTGA___TGGAACACAGCTGCTAGGCATATTGTCAAATAAATATGTAAAAATATAGCACTCACTTCTTTCCATCAGATAATTTTATATGTGGAAGCCTGCAAAAATGATCAATGACAAAGTTGAAGGCATAAAAGTGTATACACAAAGCTTAACATCTCCACAGAGTTCCAAGTTCAAAAACCAACATAAAAGAAACATATTGGAGGGAAATAATTCCTGAAGTTTCAGATTGCACTGTACCTCAAATCTTTCCTTGTTCAGAACGATTCTGACCCCGTTAAGGTGGCTAGGTACATCATGACCTTTGTATTTAATCAAATCAGCTTTGAT

Fln Alignment:

sp_v1.1_unigene11382___FVNGNLAGSQTGDYSKWGFTFEKPIALQAGENHIALLSMTVGLQNIGPFFDTWPTGINGPVKLLGLRNGPMDLSSQTWYYQIGLKGEYVQLYSDTGAKQIEWISGVNPPKQTALIWYKTEFNAPEGTNSVALDLSTMNKGQAWVNGNHIGRYFVSLKAPTDGCSNICDYRGTYYSSKCDTNCGEPTQKWYHVPRSWLHPTKNVLVLLEEVGGDPSGISFGTRYVDTVCAHVSQAH------------PTVSSLTLPELRLQCSSRQHISSISFASFGNPSGSCRNFIKGSCHAVNSTSIVEKACLGKEKCSISVSEDLF-GISCADNLKSLAVEGVC
B8LLU8_______________FINDDLAGSQYGRKENPKVRFSSGVRLNVGTNKISLLSMTVGLQNIGPHFEMANAGVLGPITLSGFKDGTRDLSSQRWSYQIGLKGETMNLHT-SGDNTVEWMKGVAVPQSQPLRWYKAEFDAPAGEDPLGLDLSSMGKGQAWVNGQSIGRYWPSYLAE-GVCSDGCSYEGTYRPHKCDTNCGQSSQRWYHVPRSWLQPSGNTLVLFEEIGGNPSGVSLVTRSVDSVCAHVSESHSQSINFWRLESTDQVQKLHIPKVHLQCSKGQRISAIKFASFGTPQGLCGSFQQGDCHSPNSVATIQKKCMGLRKCSLSVSEKIFGGDPCPGVRKGVAIEAVC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
418		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain