SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11381

Length: 1753 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene11381 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	patched family protein [Arabidopsis thaliana]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	76%
Blast2go	cholesterol transport protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	cholesterol transport	GO:0030301	Biological Process	83%
Blast2go	hedgehog receptor activity	GO:0008158	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Patched	IPR003392	-	0.0	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SMD3

Fln msg: your sequence is shorter than subject: 308 - 584

Fln protein: DCTTCFLHSDLIGSRPSTVQFRDKLPWFLSAFPSADCAKGGHGAYTNSVDLKGYENGVIQASEFRTYHTPLNKQRDFVNAMKAAREFAARVSDSLKISVYPYSVFYIFFEQYLDIWRTTLINLSVALGAVFIVCVVITSSLWLSAIILLVLAMIVLDIMGLMALLSIQLNAISVVNLVMSIGIAVEFCVHITHAFSVSEGDGAQRSKEALTTMGASVFSGITITKFVGVLVLCFARSEIFEVYYFRMYLALVILGFLHGLIFLPVLLSVCGPPSIKSVLDNDEHDQSRTHPNQHDLRLYKMERESSD*

Protein Length: 309

Fln nts: GACTGCACAACGTGCTTCTTACATTCAGATCTCATTGGAAGCCGCCCATCTACAGTACAATTCAGAGATAAACTTCCATGGTTTCTGTCTGCATTTCCATCTGCAGATTGTGCAAAGGGGGGTCATGGTGCTTATACCAACAGTGTTGATCTCAAAGGATATGAGAATGGAGTAATTCAAGCATCAGAATTCCGTACATATCACACGCCCTTAAACAAACAGAGAGATTTTGTAAATGCAATGAAGGCTGCAAGGGAGTTTGCTGCAAGAGTTTCAGATTCTCTAAAGATTTCAGTCTACCCATACTCAGTGTTCTATATTTTCTTCGAGCAATACTTGGACATTTGGAGGACAACATTGATTAATCTTTCAGTTGCACTTGGAGCTGTGTTTATCGTTTGTGTTGTCATTACTTCCAGTTTATGGCTTTCAGCAATAATTTTGCTCGTACTGGCAATGATTGTACTGGATATCATGGGTTTGATGGCACTGCTGAGTATTCAATTAAATGCAATTTCTGTGGTGAATCTTGTAATGTCAATTGGTATCGCAGTAGAGTTCTGTGTCCACATTACCCATGCATTCTCTGTGAGTGAAGGAGACGGGGCACAGCGCTCAAAAGAAGCACTTACAACCATGGGAGCTTCTGTTTTCAGCGGAATAACAATTACAAAATTTGTTGGTGTGCTTGTACTATGCTTTGCACGATCAGAGATATTTGAGGTCTACTATTTTCGAATGTACCTTGCTCTTGTGATACTTGGGTTCTTGCATGGTCTTATTTTTCTACCAGTGTTATTGAGTGTCTGTGGTCCTCCATCCATCAAGTCTGTGTTAGATAATGATGAGCATGACCAGTCTAGAACTCACCCAAATCAACATGATTTGCGATTGTATAAAATGGAAAGGGAATCCTCAGATTGA___TATTGAGTCTGACATAATCTTGTGCAAGTATTTCATCGAGTTAGGTTACTGAAAGGTGATACTCTTATTTGTAAATAGCTGCAGTGAGGCTGAACAGCCACAAACTTTATGCCCTCTTGAAGTTTGAGATTATATAAGAAAATGTATTCAATGCATTCATTGACCCAACAAGACATGACCAAGAAAAAGTGCAAATGGAAGTTAATAATCTTGATTACTTACCTATCGCTTGTAAATACAAGACATGGCGGCGAGGAACCTAATTGCCATAGAGCTATCTCTGCACTCTCAGATATATTCAAGACAGAATTTAGCTGCAGGTACTCGATTATGCACTGCTACACAAGGTACCTTTCCAAGATTACAATATACAATTGAGTGTGTGTTAGTAATCTCAAGCAAAAATGTTGGTGATATGATATGTTCATTTGCTAACTCACCTCACTGAATGTGTGCAATAAGATGTTTTCAGAAAAGATGGTAGTAAAACCATTTGAATGATAGTGGAAAAATAGCTGTCATATGACTAAATAAGGGTGAGATAAATATTGTCCACCACAGAGAGGATTCTGCATGGACGCTAACCTGTGGCCATATGTCATACGTGGTCTCACTTGTGCAATTATTTTGTGCGGTGCTTCACAACAGCTTCTTCTGTACACTGGTCATACATCCCGCAGTAGTAACCTTGCCATTATTTAGTCATGCAGGTTGCTCTGATGTGGTTGCACGATGAACAATATATGAACTCCGCAGTAAATGACAAGGCTTCTTGCTATCTATATTTAATACCTTTTGCATATGGCTAGTTGCAACAAATAATGGCTCG

Fln Alignment:

sp_v1.1_unigene11381___DCTTCFLHSDLIGSRPSTVQFRDKLPWFLSAFPSADCAKGGHGAYTNSVDLKGYENGVIQASEFRTYHTPLNKQRDFVNAMKAAREFAARVSDSLKISVYPYSVFYIFFEQYLDIWRTTLINLSVALGAVFIVCVVITSSLWLSXXXXXXXXXXXXXXMGLMALLSIQLNAISVVNLVMSIGIAVEFCVHITHAFSVSEGDGAQRSKEALTTMGASVFSGITITKFVGVLVLCFARSEIFEVYYFRMYLALVILGFLHGLIFLPVLLSVCGPPSIKSVLDNDEHDQS
B9SMD3_______________DCTTCFRHSDLVNDRPSTVQFREKLPWFLNALPSADCAKGGHGAYTNSVDLNGYESGVIRASEFRTYHTPVNKQSDYVNALQAAREFSSSISDSLKIDIFPYSVFYIFFEQYLDIWRIALINIAIALGAIFIVCLVITSSLWSSAIILLVLLMIVVDLMGVMAILDIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGDRSTRAKEALTTMGASVFSGITLTKLVGVIVLFFSRSEIFVVYYFQMYLALVLIGFLHGLVFLPVILSMFGPPA-RHVIKNPEAEPS

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
483		90		10	0.90298
484		90	10		0.90298
485	10			90	0.90298
490	10			90	0.90298
496			12	87	0.992554
497			87	12	0.992554
500		12		87	0.992554
501	87		12		0.992554
517		85		14	0.993533
518			14	85	0.993533
520	71	14		14	0.984337
522			14	85	0.993533
523		14		85	0.993533
525	28			71	1.0
526	28		42		1.0
527			57	42	1.0
528	14		14	14	0.979185
529		28		42	1.0
530		57		42	1.0
531	28			71	1.0
532		14		28	1.0
535	71	14	14		0.984337
536			14	85	0.993533
537	66		16	16	0.988813
540		16	16	66	0.988813
541	16	83			0.994512
542			20	80	0.995493
543		40	60		1.0
544	60	40			1.0
545	20	20	60		0.99255
547			80	20	0.995493
548			25	75	0.996473
549			75	25	0.996473
1498		88	11		0.923564
1499	87			12	0.992554
1500	87		12		0.992554
1503	12			87	0.992554
1504		85	14		0.993533
1507	14			85	0.993533
1508	28			71	1.0
1513	14	85			0.993533
1515			14	85	0.993533
1674	88	11			0.923564
1675		11	88		0.923564
1676	88	11			0.923564
1678	88			11	0.923564
1745	20		80		0.995493
1746		80	20		0.995493
1749	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain