SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11346

Length: 2869 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11346
ATGGGGAACAATAAAAGAGTGCAGGTTTCGTTTCAAATGTAAAGAACAAAGTTTTACCCCGATACGGTGAAGTTTAAAGTGAAATGACCTAGTGTCGAGCTTAACCGGCGAAAATCTTAGTCTGATCTGGTGCACATTTGGGCTTAAAACCAAAGAAATGTTACAGATTGAATTCGGCGACAGCCTGGCTATGCCCCAAGAAATGTTACAGATTAGATTCGGCGACAGCCTGGCTATGCCCCGCGTCTGAGCTGGTAGGAGGCGACTATCGGCATTCTGCTGGTATTTGCACAAAAAGATTTTTCATAGACACGGCATTGCAACTTTCTGGCACGGGTGCTGGAACACGGTGCCGTTTCGAGGTTTCGAGGTTCAATCCTTTTAATAGTCAAGTCATTTGTGCAGGAAATGAAGATTTGAGTTCTCCGGAAACACATTAAGGATATCGTAGCTCTTTGAACATGGGAAAGAAAATTTTGCAATGTTTGCGGTTAATTATTGCTATATTGACGGCGACTATTACGATATCGCACGGAACTACGGATCCAGACGACGTTTCTGCGCTCAAAGGCATATATAGCAGTCTAAATTCTCCCCAGCAACTTTCTGGATGGAGTGCAAATGGAGGAGATCCATGTGGTCAGTCCTGGAAAGGGGTTTCATGTTCTGGATCATCAGTTACATCAATCAAGCTCTCAGGCTTAGGATTGTCAGGATCATTGTATTACCAACTTTCAGACCTTTCATCATTGACAACCTTGGATTTGAGCAACAACAACATTCAGGGCAACATTCCTTATGCACTTCCACAGAAACTCCAGGAGTTAAACCTTGCTAGCAATGGCCTCAGTGGTACTATACCGTATTCAATTTCGAACATGACTGGCCTCACAGATTTGAAGTTGAGTCACAATCAACTTTCAGGTCAGATCCAAGATATATTTGGACAGCTTTCCAGCCTCTCTACTCTGGATCTATCCTTCAATACTTTGACTCAAAATCTGCCGCAGAGTTTCAGCTCATTGTCGAGTCTCAGTGTGCTATATTTGCAAAATAATCAGCTTACTGGTTCTGTTAATGTTCTTGCCAATCTGCCACTCACAGATTTGAATATTGAAAATAACCGTTTTAGTGGTTGGGTACCCAATCCCTGGAGGTCCAACCAAAACTTTAAATATAGCAGTGGTAATAGTTTCGCCACTGGTCCTGCTCCTCCTCCCCCACCATATACTCCACCTCCACCTTCTAACAATCGGCCACCCAAGTCCTCAAATGTGGTCCCTTCATCAGGTGGCTCAAAGGGTGGGAACAGCAATAAGAAATCTCTGAGTGGTGGTGCCATAGCGGGCATAATATTTGCAGTTATTTTGACTGTTGTTGCTGCTATATTAGGAGTTATTTTATATGCACGTAAGTCTCCTAGAAGAGAGCAGGATGAAGAAAAACTAAGCAATCGCGTGTCTTTCACCCCCCTATCTCCCCTCGATGCTGAATTATTGAAAGAGAGTCCAGAGCAAAAAGTCAGCTCATCACCTCCTGAAATCACTCTTAAGCCTCCCCCCTCTGAACGCAACAAGTCTACAGGGGACAAAGGCTTCGGAAGTATTTTTTCAAGTAAGAGGACTAAAAACCCAATATCAGCAACTGAATATTCTATTGCAGACCTGCAAATGGCAACAAATAGTTTTAGTCAAGATAATCTTATTGCGGAGGGTGCTCTTGGACGAATCTACCGAGCAGAGTTTCCAGATGGAAAGATTTTGGCAGTGAAAAAATTGGACACTTCTACGCTGTCCCTACAAAGGCCTGAAGACTTCCTGGACGCAGTATCTAATATATCGCGCCTACATCATCCTAACATTACAGAACTAGTGGGTTATTGCACAGAACATGAGCAATACCTTCTTGTGTATGAATATTTCGACAATGGATCACTCTATGACGTATTGCACATGGCAGATGAGACTACTAGAAATTTGTCTTGGAACATTCGTGTAAAGATTGCGCTGGGTTCAGCTCGAGTTTTAGAGTATTTGCATGAAGTTTGCTCTCCATCTATTGTGCATAAAAAATTCAAGTCGTCTAATATTTTGCTTGATGATGATTTCAACCCTCGTCTGTCCGACTGTGGAATTGCTGCCCTCAATCCAAATTCTGAGCGTCAGGTTCAGGTGCTGGGTTCATTTGGGTACAGTGCTCCTGAATATGTCATGTCAGGAATCTATACAATGAAGAGCGATGTGTATAGTTTTGGAGTGGTAATGCTTGAGCTTTTGACAGGCCGGAAGCCCTTGGATAGTTCAAGAACAAGGTCAGAACAGTCATTAGTAAGATGGGCCACCCCTCAGCTTCATGATATTGATGCATTGGCAAAGATGGTTGATCCAGCTTTGAAGGGAAGTTATCCTGCAAAATCTCTCTCGCGCTTTGCTGATATTATTGCCCTCTGCATTCAGCCTGAACCAGAATTCCGTCCTCCAATGTCTGAAGTGGTGCAAGCATTGGTTCGTATGATGCAACGGGCTAGCCTCAACAAGAGGATGACAGGAGATGAAACTGCAGACCACGATCCTGTAGATTATTAAATACAGTGATATTGCCTTGGTGGTACTCTTTAAGAAAATATTTAATTCTAAAAAGCTCGTACCGCCTTCTTTGGACTTTCCAAAACAGTTGAAGAGTTGATAACTTCATTATTTAGCTCCTAAGGCCTTCGTTGGACTTCCACAACAGTTGAAAGAGTTGATAGCATCATTATTTTCATAAATTGAATCTGTTCAAGATATTTTATAGTCCACGTTGTGGTGAAAACAGTGTAATTGAAATATTAATAAAATATTAACACTTGGTTTGCTCATTGTGTTTTAAC

Ace file of the UniGene sp_v1.1_unigene11346

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ltk2; leucine-rich repeat transmembrane protein kinase 2	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	75%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	integral to membrane	GO:0016021	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	75%
Blast2go	Leucine-rich repeat	IPR001611	-	75%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	75%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	75%
Blast2go	Protein kinase-like domain	IPR011009	-	75%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	75%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	75%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKU4

Fln msg: your sequence is longer than subject: 708 - 366

Fln protein: MGKKILQCLRLIIAILTATITISHGTTDPDDVSALKGIYSSLNSPQQLSGWSANGGDPCGQSWKGVSCSGSSVTSIKLSGLGLSGSLYYQLSDLSSLTTLDLSNNNIQGNIPYALPQKLQELNLASNGLSGTIPYSISNMTGLTDLKLSHNQLSGQIQDIFGQLSSLSTLDLSFNTLTQNLPQSFSSLSSLSVLYLQNNQLTGSVNVLANLPLTDLNIENNRFSGWVPNPWRSNQNFKYSSGNSFATGPAPPPPPYTPPPPSNNRPPKSSNVVPSSGGSKGGNSNKKSLSGGAIAGIIFAVILTVVAAILGVILYARKSPRREQDEEKLSNRVSFTPLSPLDAELLKESPEQKVSSSPPEITLKPPPSERNKSTGDKGFGSIFSSKRTKNPISATEYSIADLQMATNSFSQDNLIAEGALGRIYRAEFPDGKILAVKKLDTSTLSLQRPEDFLDAVSNISRLHHPNITELVGYCTEHEQYLLVYEYFDNGSLYDVLHMADETTRNLSWNIRVKIALGSARVLEYLHEVCSPSIVHKKFKSSNILLDDDFNPRLSDCGIAALNPNSERQVQVLGSFGYSAPEYVMSGIYTMKSDVYSFGVVMLELLTGRKPLDSSRTRSEQSLVRWATPQLHDIDALAKMVDPALKGSYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQALVRMMQRASLNKRMTGDETADHDPVDY*

Protein Length: 709

Fln nts: ATGGGGAACAATAAAAGAGTGCAGGTTTCGTTTCAAATGTAAAGAACAAAGTTTTACCCCGATACGGTGAAGTTTAAAGTGAAATGACCTAGTGTCGAGCTTAACCGGCGAAAATCTTAGTCTGATCTGGTGCACATTTGGGCTTAAAACCAAAGAAATGTTACAGATTGAATTCGGCGACAGCCTGGCTATGCCCCAAGAAATGTTACAGATTAGATTCGGCGACAGCCTGGCTATGCCCCGCGTCTGAGCTGGTAGGAGGCGACTATCGGCATTCTGCTGGTATTTGCACAAAAAGATTTTTCATAGACACGGCATTGCAACTTTCTGGCACGGGTGCTGGAACACGGTGCCGTTTCGAGGTTTCGAGGTTCAATCCTTTTAATAGTCAAGTCATTTGTGCAGGAAATGAAGATTTGAGTTCTCCGGAAACACATTAAGGATATCGTAGCTCTTTGAAC_-_ATGGGAAAGAAAATTTTGCAATGTTTGCGGTTAATTATTGCTATATTGACGGCGACTATTACGATATCGCACGGAACTACGGATCCAGACGACGTTTCTGCGCTCAAAGGCATATATAGCAGTCTAAATTCTCCCCAGCAACTTTCTGGATGGAGTGCAAATGGAGGAGATCCATGTGGTCAGTCCTGGAAAGGGGTTTCATGTTCTGGATCATCAGTTACATCAATCAAGCTCTCAGGCTTAGGATTGTCAGGATCATTGTATTACCAACTTTCAGACCTTTCATCATTGACAACCTTGGATTTGAGCAACAACAACATTCAGGGCAACATTCCTTATGCACTTCCACAGAAACTCCAGGAGTTAAACCTTGCTAGCAATGGCCTCAGTGGTACTATACCGTATTCAATTTCGAACATGACTGGCCTCACAGATTTGAAGTTGAGTCACAATCAACTTTCAGGTCAGATCCAAGATATATTTGGACAGCTTTCCAGCCTCTCTACTCTGGATCTATCCTTCAATACTTTGACTCAAAATCTGCCGCAGAGTTTCAGCTCATTGTCGAGTCTCAGTGTGCTATATTTGCAAAATAATCAGCTTACTGGTTCTGTTAATGTTCTTGCCAATCTGCCACTCACAGATTTGAATATTGAAAATAACCGTTTTAGTGGTTGGGTACCCAATCCCTGGAGGTCCAACCAAAACTTTAAATATAGCAGTGGTAATAGTTTCGCCACTGGTCCTGCTCCTCCTCCCCCACCATATACTCCACCTCCACCTTCTAACAATCGGCCACCCAAGTCCTCAAATGTGGTCCCTTCATCAGGTGGCTCAAAGGGTGGGAACAGCAATAAGAAATCTCTGAGTGGTGGTGCCATAGCGGGCATAATATTTGCAGTTATTTTGACTGTTGTTGCTGCTATATTAGGAGTTATTTTATATGCACGTAAGTCTCCTAGAAGAGAGCAGGATGAAGAAAAACTAAGCAATCGCGTGTCTTTCACCCCCCTATCTCCCCTCGATGCTGAATTATTGAAAGAGAGTCCAGAGCAAAAAGTCAGCTCATCACCTCCTGAAATCACTCTTAAGCCTCCCCCCTCTGAACGCAACAAGTCTACAGGGGACAAAGGCTTCGGAAGTATTTTTTCAAGTAAGAGGACTAAAAACCCAATATCAGCAACTGAATATTCTATTGCAGACCTGCAAATGGCAACAAATAGTTTTAGTCAAGATAATCTTATTGCGGAGGGTGCTCTTGGACGAATCTACCGAGCAGAGTTTCCAGATGGAAAGATTTTGGCAGTGAAAAAATTGGACACTTCTACGCTGTCCCTACAAAGGCCTGAAGACTTCCTGGACGCAGTATCTAATATATCGCGCCTACATCATCCTAACATTACAGAACTAGTGGGTTATTGCACAGAACATGAGCAATACCTTCTTGTGTATGAATATTTCGACAATGGATCACTCTATGACGTATTGCACATGGCAGATGAGACTACTAGAAATTTGTCTTGGAACATTCGTGTAAAGATTGCGCTGGGTTCAGCTCGAGTTTTAGAGTATTTGCATGAAGTTTGCTCTCCATCTATTGTGCATAAAAAATTCAAGTCGTCTAATATTTTGCTTGATGATGATTTCAACCCTCGTCTGTCCGACTGTGGAATTGCTGCCCTCAATCCAAATTCTGAGCGTCAGGTTCAGGTGCTGGGTTCATTTGGGTACAGTGCTCCTGAATATGTCATGTCAGGAATCTATACAATGAAGAGCGATGTGTATAGTTTTGGAGTGGTAATGCTTGAGCTTTTGACAGGCCGGAAGCCCTTGGATAGTTCAAGAACAAGGTCAGAACAGTCATTAGTAAGATGGGCCACCCCTCAGCTTCATGATATTGATGCATTGGCAAAGATGGTTGATCCAGCTTTGAAGGGAAGTTATCCTGCAAAATCTCTCTCGCGCTTTGCTGATATTATTGCCCTCTGCATTCAGCCTGAACCAGAATTCCGTCCTCCAATGTCTGAAGTGGTGCAAGCATTGGTTCGTATGATGCAACGGGCTAGCCTCAACAAGAGGATGACAGGAGATGAAACTGCAGACCACGATCCTGTAGATTATTAA___ATACAGTGATATTGCCTTGGTGGTACTCTTTAAGAAAATATTTAATTCTAAAAAGCTCGTACCGCCTTCTTTGGACTTTCCAAAACAGTTGAAGAGTTGATAACTTCATTATTTAGCTCCTAAGGCCTTCGTTGGACTTCCACAACAGTTGAAAGAGTTGATAGCATCATTATTTTCATAAATTGAATCTGTTCAAGATATTTTATAGTCCACGTTGTGGTGAAAACAGTGTAATTGAAATATTAATAAAATATTAACACTTGGTTTGCTCATTGTGTTTTAAC

Fln Alignment:

sp_v1.1_unigene11346___PISATEYSIADLQMATNSFSQDNLIAEGALGRIYRAEFPDGKILAVKKLDTSTLSLQRPE---DFLDAVSNISRLHHPNITELVGYCTEHEQYLLVYEYFDNGSLYDVLH-----MADETTRNLSWNIRVKIALGSARVLEYLHEVCSPSIVHKKFKSSNILLDDDFNPRLSDCGIAALNPNSERQV---QVLGSFGYSAPEYVMSGIYTMKSDVYSFGVVMLELLTGRKPLDSSRTRSEQSLVRWATPQLHDIDALAKMVDPALKGSYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQAL
B8LKU4_______________PIEAPSLSLDELKEATDNFGPKALIGEGSYGRVYYATLSDGQPAAIKKLDVSN----QPEANAEFLAQVSMVSRLKHDHIVELVGYCVEGTLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWMQRVKIAVGAAKGLEYLHEKAQPHIIHRDIRSSNVLLFDDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKAL

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
384	33	66			0.997452
385	33			66	0.997452
386			33	66	0.997452
388		33		66	0.997452
390	66			33	0.997452
392	66			33	0.997452
395		40	60		1.0
396	40	60			1.0
599			10	90	0.90298
603		11	88		0.923564
604	88		11		0.923564
605		11		88	0.923564
606			88	11	0.923564
607		11	88		0.923564
738			10	90	0.90298
742		90	10		0.90298
744			10	90	0.90298
750	90		10		0.90298
1055			97	2	0.966038
1414		88	11		0.923564
1415		11		88	0.923564
1418	88		11		0.923564
1421	87			12	0.992554
1429	87	12			0.992554
1430		14		85	0.993533
1560			83	16	0.994512
1674	90			9	0.999872
1675	90	9			0.999872
1676			9	90	0.999872
1683	90			9	0.999872
1691		9		90	0.999872
2334	88			3	0.999079
2335		92	7		0.999602
2336		92		7	0.999602
2418		91		8	0.999766
2423			8	91	0.999766

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain