SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11328

Length: 390 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene11328
GGTGATCAGTCCAGTGGAAGTGCGTGGATTTGTTATTACAGTCGATGAATTAGCTAAAGTTCAAAATGAAGTCTATGATCAGAAAACAATCCTAGTCGTAAACAGAGTAAAGGGAGAGGAAGAAATTCCGGATGGTGTAGTTGCTGTTTTGACGCCTGACATGCCTGATGTTTTATCTCATGTGTCAGTGCGGGCAAGGAATAGCAAGGTGTGCTTTGCAACGTGCTTTGATCCAAACATTCTTGATGACCTTCGAGCAAAGGAAGGAAAGGCATTGTTGATACGACCTACTTCATCCGACCTAGTCTATAATGAAATCAAGGTTAATGAAGTTTGGGATGACTCGGAAAATCTATCACAAGGCCATGGAGTATCTCAAGGAATAGCATT

Ace file of the UniGene sp_v1.1_unigene11328

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-glucan water dikinase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SPI3_RICCO	-	-	4.00001e-40	72%
FL-Next	sp=Alpha-glucan water dikinase, chloroplastic; Solanum tuberosum (Potato).	-	-	0.0	67%
Blast2go	alpha-glucan water chloroplast	-	-	2.11801e-40	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histidine kinase.	EC:2.7.13.3	-	2.11801e-40	79%
Blast2go	Alpha-glucan, water dikinase.	EC:2.7.9.4	-	2.11801e-40	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to symbiotic fungus	GO:0009610	Biological Process	2.11801e-40	79%
Blast2go	starch catabolic process	GO:0005983	Biological Process	2.11801e-40	79%
Blast2go	cold acclimation	GO:0009631	Biological Process	2.11801e-40	79%
Blast2go	phosphorylation	GO:0016310	Biological Process	2.11801e-40	79%
Blast2go	protein histidine kinase activity	GO:0004673	Molecular Function	2.11801e-40	79%
Blast2go	metal ion binding	GO:0046872	Molecular Function	2.11801e-40	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	2.11801e-40	79%
Blast2go	alpha-glucan, water dikinase activity	GO:0050521	Molecular Function	2.11801e-40	79%
Blast2go	protein binding	GO:0005515	Molecular Function	2.11801e-40	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.11801e-40	79%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	2.11801e-40	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9AWA5

Fln msg: Distance to subject end: 325 aas, your sequence is shorter than subject: 129 - 1464

Fln protein: VISPVEVRGFVITVDELAKVQNEVYDQKTILVVNRVKGEEEIPDGVVAVLTPDMPDVLSHVSVRARNSKVCFATCFDPNILDDLRAKEGKALLIRPTSSDLVYNEIKVNEVWDDSENLSQGHGVSQGIA

Protein Length: 130

Fln nts: GGTGATCAGTCCAGTGGAAGTGCGTGGATTTGTTATTACAGTCGATGAATTAGCTAAAGTTCAAAATGAAGTCTATGATCAGAAAACAATCCTAGTCGTAAACAGAGTAAAGGGAGAGGAAGAAATTCCGGATGGTGTAGTTGCTGTTTTGACGCCTGACATGCCTGATGTTTTATCTCATGTGTCAGTGCGGGCAAGGAATAGCAAGGTGTGCTTTGCAACGTGCTTTGATCCAAACATTCTTGATGACCTTCGAGCAAAGGAAGGAAAGGCATTGTTGATACGACCTACTTCATCCGACCTAGTCTATAATGAAATCAAGGTTAATGAAGTTTGGGATGACTCGGAAAATCTATCACAAGGCCATGGAGTATCTCAAGGAATAGCATT

Fln Alignment:

sp_v1.1_unigene11328___VISPVEVRGFVITVDELAKVQNEVYDQKTILVVNRVKGEEEIPDGVVAVLTPDMPDVLSHVSVRARNSKVCFATCFDPNILDDLRAKEGKALLIRPTSSDLVYNEIKVNEVWDDS
Q9AWA5_______________IISPVEAVGYVVVVDELLSVQNEIYEKPTILVAKSVKGEEEIPDGAVALITPDMPDVLSHVSVRARNGKVCFATCFDPNILADLQAKEGRILLLKPTPSDIIYSEVNEIELQSSS

SNPs (tot: 3)

Position	A %	G %	T %	Probability
277	80	20		0.995493
339		33	66	0.997452
341		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain