SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11308

Length: 2399 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene11308
GCTGGTGCTGCTGATGCTGCTGTTGCGGATGCTGCTTTTGCAGCACCAGCAACAACAGCATATGATGCCGGCGACGAACTCCTCACATGTTCCACCTGGGTTTGGTAATGGTTCCAGTGTACCAGCTGGTCTTGGCCCACGCCAAGCTGCCGAACCGTATAAGTATCGTCCAAACCGAACCAATCACCCAAATCCAAACGTCAAACTGGCACCGAGGATGCAGGGAAATGCTGAACTCCCTAATTCCACAGCGGTTGATGCCTATCGCAGGCAACACGAGGTTTCAGCCCAGGGGGATAATGTTCCTGCTCCTTTTATGTCATTTGACCAAACTGGATTTCCACCGGAAATTCTTCGAGAGCTACAAAATGCAGGCTTCTCCTCTCCCACTCCAATACAAGCACAATCATGGCCTATTGCTATGCAGAATCAGGACATTGTAGCCATTGCCAAAACAGGTTCTGGGAAAACATTAGGTTATCTATTACCTGCATTTATTCATCTTCGACGCCGTTGTAACAACACTCAGATGGGCCCAACGGTACTTGTTTTGGCACCAACGCGAGAGCTTGCAACTCAAATACAAGAAGAAGCAATAAAGTTTGGTAGATCATCAAGGATTACATGCACGTGCTTATATGGAGGAGCACCAAAAGGCCCACAACTAAGGGATTTGGAACGTGGAGTTGATATTGTTGTTGCCACTCCGGGAAGACTAAATGACATTTTAGAAACTAAAAAAGTAAACCTTCGGCAGGTTTCGTTCTTGGCACTTGATGAAGCTGATCGTATGCTTGATATGGGATTTGAGCCACAGATTCGGAAAATTGTGAATGAAATCCCGCGTCAAAGGCAAACCTTGATGTATACAGCAACTTGGCCCAAGGAGGTTCGGAAGATAGCTGGTGATTTGCTGGTTAATCCTGTTCAGGTTACAATAGGGACTATTGATGAGTTAGCTGCGAATAATTCCATCACCCAGTTTGTTGAAATAGTTGCGCCAATGGACAAGCAAAGAAGATTGGAACAAATCCTTAGGGGACAGGAGCCAGGGTCAAGAATTATAATATTTTGCTCAACAAAAAGGATGTGTGACAATCTTTCTCGAAGTCTTGGTCGACAATTTGGCGCTATTGCTATCCACGGGGACAAGTCTCAAGGAGAGAGAGATTGGGTTTTAGGCCAGTTCAGAACTGGAAAATCACCTGTGCTAGTTGCAACAGATGTGGCTGCAAGAGGGCTTGATATTAAAGATATACGGGTGGTGATAAACTATGACTTTCCCACTGGTGTTGAAGATTATGTTCATAGAATTGGTAGAACTGGTCGAGCTGGTGCTACAGGACTAGCGCATACATTTCTTTCTGATCAGGATGCCAAATATGCTCCTGATCTAATTAAGGTTCTAGAACGTGCAAATCAAAGAGTTCCTCCAGAGGTGAGAGATATGGCGTCTCGTGCAGGAAGCTTTAGCAAAGGCCGTGGTGGTAGATGGGATTTTGGAGGCCGTGGTGGAAGGGATGCAGGTCGTGGTTTCGGTGGTGGCCGTGTGGATTCATTTGGTGGAAGAGGAGGATGGGGAGCTCCAGGAGGGAGGTCTGATAGAGGTGAAAGAGGATTTGGTGGATTTGGAGGAGGTCGCGGAAGGTATGAACGGGATACACGTGATAGATACGATGGTGGACGTGATGGTTTTGACGTGGAGAGGCATGATAGAGGTCGTACTGATAGATATGTGGATGACAGAGACAGAGGGCGTGATGATTATAGAAGTGATTGGGATAGAGGCCGAAGCTATAGCAGAAGCCCAAGCAGAAGCAGGGTAAGAAAATATAGCAGAAGCCGCAGCCGCAGCCGTAGTCGTAGTCGGAGCCTTGACAGATATAGTGACAGGTATCATAGCTACAAGGGCAATTCACCTGATAGATTTGTGGGTAGCTCACCCTTGAAATCTTCTTCACCTTCAAGGAGGAATGGATCACCTGTAAGGTCTTTTTCACCCCGAAAGACTGGGTCACCTTACGGACGTCCATTGAGCAATAGAGAGGTTTCTCCAAATGGCAGCAGATCACCATATAAGGGAGTTCCTCTGCATGAGTAAGTGTATCATGATGGTTGTGTCTTTCTATTAACATATTTTTGATATTGTTGCAGTGAAAACTCAATATTTTTGCAGTCAAGTTTTAAATTTTGTAAACTCGTCGTTATTGACGGTCCCTCTTCCACTGGGGAAAATGTCAGATTTTTTGCACTCAACAAAATTTTTAAACGCCTAATTGCTGTAACCAGACACTATGTTTATCATATGATCTCAATTTATTGTCAAATATAATTTTGTTACAACAATGTAAACTTCTTTTCTTCGCAAGCGGAGGAACTCAGTAACATTTTTGCGTTTT

Ace file of the UniGene sp_v1.1_unigene11308

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dead box ATP-dependent RNA helicase, putative	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	85%
Blast2go	ATP-dependent RNA helicase activity	GO:0004004	Molecular Function	85%
Blast2go	RNA binding	GO:0003723	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	85%
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	85%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	85%
Blast2go	RNA helicase, DEAD-box type, Q motif	IPR014014	-	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: your sequence is longer than subject: 700 - 593

Fln protein: LVLLMLLLRMLLLQHQQQQHMMPATNSSHVPPGFGNGSSVPAGLGPRQAAEPYKYRPNRTNHPNPNVKLAPRMQGNAELPNSTAVDAYRRQHEVSAQGDNVPAPFMSFDQTGFPPEILRELQNAGFSSPTPIQAQSWPIAMQNQDIVAIAKTGSGKTLGYLLPAFIHLRRRCNNTQMGPTVLVLAPTRELATQIQEEAIKFGRSSRITCTCLYGGAPKGPQLRDLERGVDIVVATPGRLNDILETKKVNLRQVSFLALDEADRMLDMGFEPQIRKIVNEIPRQRQTLMYTATWPKEVRKIAGDLLVNPVQVTIGTIDELAANNSITQFVEIVAPMDKQRRLEQILRGQEPGSRIIIFCSTKRMCDNLSRSLGRQFGAIAIHGDKSQGERDWVLGQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGLAHTFLSDQDAKYAPDLIKVLERANQRVPPEVRDMASRAGSFSKGRGGRWDFGGRGGRDAGRGFGGGRVDSFGGRGGWGAPGGRSDRGERGFGGFGGGRGRYERDTRDRYDGGRDGFDVERHDRGRTDRYVDDRDRGRDDYRSDWDRGRSYSRSPSRSRVRKYSRSRSRSRSRSRSLDRYSDRYHSYKGNSPDRFVGSSPLKSSSPSRRNGSPVRSFSPRKTGSPYGRPLSNREVSPNGSRSPYKGVPLHE*

Protein Length: 701

Fln nts: GCTGGTGCTGCTGATGCTGCTGTTGCGGATGCTGCTTTTGCAGCACCAGCAACAACAGCATATGATGCCGGCGACGAACTCCTCACATGTTCCACCTGGGTTTGGTAATGGTTCCAGTGTACCAGCTGGTCTTGGCCCACGCCAAGCTGCCGAACCGTATAAGTATCGTCCAAACCGAACCAATCACCCAAATCCAAACGTCAAACTGGCACCGAGGATGCAGGGAAATGCTGAACTCCCTAATTCCACAGCGGTTGATGCCTATCGCAGGCAACACGAGGTTTCAGCCCAGGGGGATAATGTTCCTGCTCCTTTTATGTCATTTGACCAAACTGGATTTCCACCGGAAATTCTTCGAGAGCTACAAAATGCAGGCTTCTCCTCTCCCACTCCAATACAAGCACAATCATGGCCTATTGCTATGCAGAATCAGGACATTGTAGCCATTGCCAAAACAGGTTCTGGGAAAACATTAGGTTATCTATTACCTGCATTTATTCATCTTCGACGCCGTTGTAACAACACTCAGATGGGCCCAACGGTACTTGTTTTGGCACCAACGCGAGAGCTTGCAACTCAAATACAAGAAGAAGCAATAAAGTTTGGTAGATCATCAAGGATTACATGCACGTGCTTATATGGAGGAGCACCAAAAGGCCCACAACTAAGGGATTTGGAACGTGGAGTTGATATTGTTGTTGCCACTCCGGGAAGACTAAATGACATTTTAGAAACTAAAAAAGTAAACCTTCGGCAGGTTTCGTTCTTGGCACTTGATGAAGCTGATCGTATGCTTGATATGGGATTTGAGCCACAGATTCGGAAAATTGTGAATGAAATCCCGCGTCAAAGGCAAACCTTGATGTATACAGCAACTTGGCCCAAGGAGGTTCGGAAGATAGCTGGTGATTTGCTGGTTAATCCTGTTCAGGTTACAATAGGGACTATTGATGAGTTAGCTGCGAATAATTCCATCACCCAGTTTGTTGAAATAGTTGCGCCAATGGACAAGCAAAGAAGATTGGAACAAATCCTTAGGGGACAGGAGCCAGGGTCAAGAATTATAATATTTTGCTCAACAAAAAGGATGTGTGACAATCTTTCTCGAAGTCTTGGTCGACAATTTGGCGCTATTGCTATCCACGGGGACAAGTCTCAAGGAGAGAGAGATTGGGTTTTAGGCCAGTTCAGAACTGGAAAATCACCTGTGCTAGTTGCAACAGATGTGGCTGCAAGAGGGCTTGATATTAAAGATATACGGGTGGTGATAAACTATGACTTTCCCACTGGTGTTGAAGATTATGTTCATAGAATTGGTAGAACTGGTCGAGCTGGTGCTACAGGACTAGCGCATACATTTCTTTCTGATCAGGATGCCAAATATGCTCCTGATCTAATTAAGGTTCTAGAACGTGCAAATCAAAGAGTTCCTCCAGAGGTGAGAGATATGGCGTCTCGTGCAGGAAGCTTTAGCAAAGGCCGTGGTGGTAGATGGGATTTTGGAGGCCGTGGTGGAAGGGATGCAGGTCGTGGTTTCGGTGGTGGCCGTGTGGATTCATTTGGTGGAAGAGGAGGATGGGGAGCTCCAGGAGGGAGGTCTGATAGAGGTGAAAGAGGATTTGGTGGATTTGGAGGAGGTCGCGGAAGGTATGAACGGGATACACGTGATAGATACGATGGTGGACGTGATGGTTTTGACGTGGAGAGGCATGATAGAGGTCGTACTGATAGATATGTGGATGACAGAGACAGAGGGCGTGATGATTATAGAAGTGATTGGGATAGAGGCCGAAGCTATAGCAGAAGCCCAAGCAGAAGCAGGGTAAGAAAATATAGCAGAAGCCGCAGCCGCAGCCGTAGTCGTAGTCGGAGCCTTGACAGATATAGTGACAGGTATCATAGCTACAAGGGCAATTCACCTGATAGATTTGTGGGTAGCTCACCCTTGAAATCTTCTTCACCTTCAAGGAGGAATGGATCACCTGTAAGGTCTTTTTCACCCCGAAAGACTGGGTCACCTTACGGACGTCCATTGAGCAATAGAGAGGTTTCTCCAAATGGCAGCAGATCACCATATAAGGGAGTTCCTCTGCATGAGTAA___GTGTATCATGATGGTTGTGTCTTTCTATTAACATATTTTTGATATTGTTGCAGTGAAAACTCAATATTTTTGCAGTCAAGTTTTAAATTTTGTAAACTCGTCGTTATTGACGGTCCCTCTTCCACTGGGGAAAATGTCAGATTTTTTGCACTCAACAAAATTTTTAAACGCCTAATTGCTGTAACCAGACACTATGTTTATCATATGATCTCAATTTATTGTCAAATATAATTTTGTTACAACAATGTAAACTTCTTTTCTTCGCAAGCGGAGGAACTCAGTAACATTTTTGCGTTTT

Fln Alignment:

sp_v1.1_unigene11308___VDAYRRQHEVSAQGDNVPAPFMSFDQTGFPPEILRELQNAGFSSPTPIQAQSWPIAMQNQDIVAIAKTGSGKTLGYLLPAFIHLRRRCNNTQM-GPTVLVLAPTRELATQIQEEAIKFGRSSRITCTCLYGGAPKGPQLRDLERGVDIVVATPGRLNDILETKKVNLRQVSFLALDEADRMLDMGFEPQIRKIVNEIPRQRQTLMYTATWPKEVRKIAGDLLVNPVQVTIGTIDELAANNSITQFVEIVAPMDKQRRLEQILRGQEPGSRIIIFCSTKRMCDNLSRSLGRQ-FGAIAIHGDKSQGERDWVLGQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIXXXXXXXXXXLAHTFLSDQDAKYAPDLIKVLERANQRVPPEVRDMASRAGS
C0PQ26_______________VSAYRKRREITVEGRDVPKPLRSFREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQPHLAHGDGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIRPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSAD-LKANHAISQIVEVVSEYEKYPRLIKLLEEIMDGSRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEAGQRVNPELAAMTRGGGS

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
120		50		50	1.0
169			20	80	0.995493
170			20	80	0.995493
201	20		80		0.995493
292	83		16		0.994512
293			66	16	0.988813
294		16	83		0.994512
296			83	16	0.994512
299		16		83	0.994512
300	83	16			0.994512
301	83			16	0.994512
304		16		83	0.994512
306		83	16		0.994512
307		83		16	0.994512
308		16		83	0.994512
309	20		80		0.995493
313	33	66			0.997452
383		90	10		0.90298
387		90	10		0.90298
388	10	90			0.90298
393		90		10	0.90298
394		90	10		0.90298
395	90		10		0.90298
396	90	10			0.90298
398	90		10		0.90298
399		90		10	0.90298
400	90	10			0.90298
404	90			10	0.90298
410	90			10	0.90298
552		16		83	0.999991
636	12			87	0.999964
670			90	10	0.90298
2300		82		17	1.0
2347	28	14		57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain