SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene11265

Length: 1647 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene11265

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BZIP transcription factor n=1 Tax=Nicotiana tabacum RepID=Q93YM7_TOBAC	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	light-inducible protein cprf-	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	62%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	62%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	62%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	62%
Blast2go	nucleus	GO:0005634	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Blast2go	Basic-leucine zipper domain	IPR004827	-	62%
Blast2go	bZIP transcription factor, bZIP-1	IPR011616	-	62%
Blast2go	Basic leucine-zipper, C-terminal	IPR020983	-	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUK0

Fln msg: your sequence is shorter than subject: 401 - 533

Fln protein: YVKTEKEGKYEKQGSKDKKEEAAAKGVVGNEPSPSSSSSVAVNVSPLSPLLKGTGSVIEKGVVTHTNPQEYESFLKQRLDLACAAVALTRASGIDFHGAPPLTFGAQHSQNLGMESQAGSTISVAQSSGSRPIHNGALGHNVSQPIGIPALPPKPQSGTAQIKTTTSGSSREQTDDDDLEAEIEANQSSMDPSDLKRMRRMLSNRESARRSRRRKQAHLSDLEMQVAQLRVENASLFKRLTEMSQKYSEAAVDNRVLRADVEALRAKVKMAEDMVARATGVNHSIQNTTQISQASGMRYMGGPIESPVTSGPQDSSRYSHPGQPVSTQGMTCDVSNINDRSKEVLTHNVGTKMGRTPSMQRVASLEHLQKRIRGGVACGSTPWSGGWDTEGSPRIENGGQ*

Protein Length: 402

Fln nts: GGTATGTCAAGACAGAGAAAGAGGGAAAATATGAGAAGCAGGGCAGCAAGGACAAGAAGGAGGAGGCTGCAGCCAAAGGTGTTGTGGGCAATGAACCATCACCATCCTCGTCGTCATCGGTGGCGGTGAACGTCAGTCCTTTGTCTCCTCTATTGAAGGGAACGGGGTCTGTAATAGAGAAGGGCGTCGTTACCCACACTAATCCTCAGGAGTACGAATCTTTCCTTAAGCAGCGCCTCGATCTCGCATGCGCCGCTGTTGCCCTGACTCGGGCTTCAGGGATTGATTTCCATGGTGCTCCTCCCCTGACTTTTGGTGCACAACATTCTCAAAACCTTGGTATGGAGTCACAAGCAGGCTCTACTATATCGGTCGCTCAATCTTCTGGGTCTAGACCTATCCATAATGGGGCTCTGGGGCACAATGTTTCTCAGCCAATAGGTATACCTGCATTGCCCCCTAAGCCACAAAGTGGAACTGCTCAAATCAAGACTACAACCAGTGGATCGTCACGAGAGCAAACGGATGATGATGATTTAGAGGCAGAAATAGAGGCTAATCAATCAAGCATGGATCCAAGTGATTTGAAAAGAATGCGAAGAATGTTATCAAACAGAGAGTCTGCAAGGCGTTCCAGAAGAAGAAAACAAGCACATTTGAGTGACCTTGAGATGCAGGTTGCACAGTTAAGAGTAGAAAATGCTTCTTTATTCAAGCGCCTCACTGAGATGAGTCAGAAGTATAGTGAAGCTGCTGTTGATAATCGAGTACTCAGAGCAGACGTGGAGGCATTGAGAGCAAAGGTGAAGATGGCGGAAGATATGGTAGCCAGGGCAACTGGTGTAAATCATTCAATTCAAAACACAACCCAGATTTCACAAGCTTCTGGCATGCGATATATGGGTGGTCCAATAGAATCACCTGTAACTTCTGGTCCGCAGGATTCGAGTCGATACTCACATCCTGGACAGCCAGTCTCAACTCAAGGAATGACTTGCGATGTATCAAATATAAATGATCGGAGTAAAGAGGTATTGACACATAATGTTGGAACCAAAATGGGGCGGACACCCTCCATGCAACGGGTTGCGAGTTTAGAACATTTACAGAAGCGAATTCGCGGGGGAGTTGCCTGTGGATCCACGCCATGGAGTGGAGGCTGGGATACTGAAGGCTCACCTCGGATTGAGAATGGTGGACAGTAA___GCTACTGGTCAATCTAATCTTTCATTAGGTGTAGATGTTCCCAGAATTATATTTACATTTCCATCCAACGTGGAGTGTAAAGGTCAACGTGCCATCCGGGTACAAACTATTGTAGAAAAAAATGGCATAGTTAGGTCTGAAAATATCCATTTGGCCTGCTCTAGTTGTACAGTACATGATTTTGCACTCGCACAACAATGGACTATAATTATTTTCTTGGCAAGTTTAAATTCATTGATTCCCAGAAACAAGAAAGCTGCATGTGTAAATTACAAATGAAATTTAGGGAAGTCATTACATATATACAGGTTGAAATCGTTACATCATAAGAAAGGTTAGTGTTATCTGTTGTGTCTATAACATCTATGATTTCTTTGGCACTCTGGTTATACTTCGTTGTTGGGGGTAAGTTTCGGCCAATCTAATGCGGCCTGTTTTTATT

Fln Alignment:

sp_v1.1_unigene11265___VKTEKEGKYEKQGSKDKKEEAAAKGVVGNEXXXXXXXXXXXXXXXXXXXXKGTGSVIEKGVVTHTNPQEYESFLKQRLDLACAAVALTRASGIDFHGAPPLTFGAQHSQNLGMESQAGSTISVAQSSG--SRPIHNGALGHNVSQPIGIPALPPKPQSGTAQIKTTTSGSSREQTDDDDLEAEIEANQSSMDPSDLKRMRRMLXXXXXXXXXXXXKQAHLSDLEMQVAQLRVENASLFKRLTEMSQKYSEAAVDNRVLRADVEALRAKVKMAEDMVARATGVNHSIQNTTQISQASGMRYMGGPIESPVTSGPQDSSRYSHPGQPVSTQGMTCDVSNINDRSKEVLTHNVGTKMGRTPSMQRVASLEHLQKRIRGGVACGSTPWSGGWDTEGSPRIENGGQ
A9NUK0_______________VKAEKEEEDEKQRNTDKEEEVAAKAVVRNEPSSSSSLVAVNVKPLSPLL-KGTGSVMEKGVVTHNNPQDLESFLKQRLDLACAAVALTRASGIDFQGAPPLTFGAQHSQNISMESRAGSTVSVAQSSGAGSRPIYNGALGHIVSQPIGIPALPPKPQSGASQIKTTTSGSSREQTDDDELEAEIEANQSTMDPSDLKRMRRMLSNRESARRSRRRKQAHLSDLEMQVAQLRVENASLFKRLTEMSQKYNDAAVDNRILRADVEALRAKVKMAEDMVARATGVGHSIQNTAQISQASGMRYMGGPLESPVTSGLQDSSRYSHSGQPISTQGMPCDISNMNDRNKELLTQNVGTKMGRTPSMQRVASLEHLQKRIRGGVTCGSTPWSGGWDIEGSPRIENGGQ

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
233	75			25	0.996473
307		83		16	0.994512
1412		12		87	0.992554
1508		14		85	0.993533
1517		16		83	0.994512
1518			83	16	0.994512
1519	80			20	0.995493
1520	80	20			0.995493
1521	80		20		0.995493
1522		20		80	0.995493
1523	20	80			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
525	536	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain